Book Hotels in Southeast Minnesota, MN

Start date: Check-in selected.
To Date
End date: Check-out

Cabins, apartments, houseboats! We offer comfortable & private vacation rentals

Save an extra 10% or more on select hotels with Member Discounts

Access exclusive hotel deals, only with the Travelocity app

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Neighborhood
Neighborhood
Traveler experience
Traveler experience
Popular locations
Popular locations
Meal plans available
Meal plans available
Amenities
Amenities
Accessibility
Accessibility

Top Southeast Minnesota hotels

Spark by Hilton Rochester South

Spark by Hilton Rochester South

3 out of 5
4165 Maine Ave SE, Rochester, MN
Fully refundableReserve now, pay when you stay
$71 nightly
The price is $81 total per night from Oct 19 to Oct 20
$81 total
Oct 19 - Oct 20
Total with taxes and fees
This hotel features an indoor pool and a gym. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. Free perks ...
"Room and facilities were simple but very clean"

Reviewed on Oct 10, 2025

Opens in a new windowSpark by Hilton Rochester South
Hyatt House Rochester/Mayo Clinic Area

Hyatt House Rochester/Mayo Clinic Area

3 out of 5
110 Civic Center Drive NW, Rochester, MN
Fully refundableReserve now, pay when you stay
$130 nightly
The price is $150 total per night from Nov 6 to Nov 7
$150 total
Nov 6 - Nov 7
Total with taxes and fees
This hotel features an indoor pool and a gym. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. Enjoy the hot ...
"Easy check in. Appreciated having wheelchair available. Convenient parking."

Reviewed on Oct 9, 2025

Opens in a new windowHyatt House Rochester/Mayo Clinic Area
Hotel Indigo Rochester – Mayo Clinic Area by IHG

Hotel Indigo Rochester – Mayo Clinic Area by IHG

3.5 out of 5
220 S Broadway, Rochester, MN
Fully refundable
$67 nightly
The price is $77 total per night from Nov 1 to Nov 2
$77 total
Nov 1 - Nov 2
Total with taxes and fees
This hotel features a restaurant, a gym, and a bar/lounge. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. ...
"Property was very accommodating for our needs. Staff was very friendly and helpful. Rooms were great! Lovely decor and roomy. Would highly recommend this establishment."

Reviewed on Oct 5, 2025

Opens in a new windowHotel Indigo Rochester – Mayo Clinic Area by IHG
Hampton Inn Rochester-South

Hampton Inn Rochester-South

2.5 out of 5
1755 S Broadway, Rochester, MN
Fully refundableReserve now, pay when you stay
$78 nightly
The price is $90 total per night from Nov 8 to Nov 9
$90 total
Nov 8 - Nov 9
Total with taxes and fees
This hotel features an indoor pool and a 24-hour gym. Enjoy the hot tub and free perks like buffet breakfast and free self parking. You'll appreciate the free ...
"It's a clean, bright hotel conveniently close to Mayo. It's easy to find and access. The staff is friendly and helpful."

Reviewed on Oct 8, 2025

Opens in a new windowHampton Inn Rochester-South
Express Suites Riverport Inn & Suites

Express Suites Riverport Inn & Suites

3 out of 5
900 Bruski Dr, Winona, MN
Fully refundableReserve now, pay when you stay
$110 nightly
The price is $123 total per night from Oct 14 to Oct 15
$123 total
Oct 14 - Oct 15
Total with taxes and fees
This hotel features a restaurant, an indoor pool, and a bar/lounge. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public ...
"Very friendly staff. Parking is a little tight, but manageable. We had one of the specialty rooms with the car and a hot tub. It was a really fun experience!"

Reviewed on Oct 5, 2025

Opens in a new windowExpress Suites Riverport Inn & Suites
Kahler Grand Hotel

Kahler Grand Hotel

3 out of 5
20 2nd Ave Sw, Rochester, MN
Fully refundableReserve now, pay when you stay
$117 nightly
The price is $135 total per night from Oct 26 to Oct 27
$135 total
Oct 26 - Oct 27
Total with taxes and fees
This smoke-free hotel includes 2 restaurants, an indoor pool, and a 24-hour gym. Traveling on business? Take advantage of the 24-hour business center, free WiFi ...
"Super nice staff, clean room, walkable dining options, parking is difficult due to construction, but valet staff was great"

Reviewed on Oct 10, 2025

Opens in a new windowKahler Grand Hotel
AmericInn by Wyndham Rochester Near Mayo Clinic

AmericInn by Wyndham Rochester Near Mayo Clinic

3 out of 5
1625 Broadway Ave S, Rochester, MN
Fully refundableReserve now, pay when you stay
$73 nightly
The price is $84 total per night from Oct 19 to Oct 20
$84 total
Oct 19 - Oct 20
Total with taxes and fees
A full-service spa, an indoor pool, and a restaurant are all featured at this smoke-free hotel. Traveling on business? Take advantage of the free WiFi in public ...
"It is a basic, clean, well-run place with very good rates on a quality room."

Reviewed on Oct 8, 2025

Opens in a new windowAmericInn by Wyndham Rochester Near Mayo Clinic
Kahler Inn and Suites - Mayo Clinic Area

Kahler Inn and Suites - Mayo Clinic Area

3.5 out of 5
9 3rd Ave Nw, Rochester, MN
Fully refundableReserve now, pay when you stay
$118 nightly
The price is $136 total per night from Oct 24 to Oct 25
$136 total
Oct 24 - Oct 25
Total with taxes and fees
This hotel features an indoor pool and a gym. Business travelers can take advantage of the free WiFi in public areas. Enjoy the free self-serve breakfast each ...
"Good location"

Reviewed on Oct 9, 2025

Opens in a new windowKahler Inn and Suites - Mayo Clinic Area
Med City Inn & Suites - Mayo Clinic Area

Med City Inn & Suites - Mayo Clinic Area

2.5 out of 5
435 16th Ave Nw, Rochester, MN
Fully refundableReserve now, pay when you stay
$72 nightly
The price is $83 total per night from Oct 14 to Oct 15
$83 total
Oct 14 - Oct 15
Total with taxes and fees
2 indoor pools, a 24-hour gym, and a hot tub are all featured at this traditional motel. Bring the family and enjoy the children's pool, waterslide, and kid-friendly ...
"This is an average type travel hotel but for the price decent continental breakfast options are available, nice shuttle service, clean pool, hot tub and exercise area, walkable for Mayo buildings and other dining options and is pet friendly so for a budget hotel you give it a five star rating👍"

Reviewed on Oct 10, 2025

Opens in a new windowMed City Inn & Suites - Mayo Clinic Area
Don't see what you're looking for?
See all available properties in Southeast Minnesota
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Cheap Southeast Minnesota hotels

Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Recent Southeast Minnesota hotel reviews by fellow wanderers

Explore More Ways to Travel with Travelocity