Book Hotels in Southeast Minnesota, MN

Cabins, apartments, houseboats! We offer comfortable & private vacation rentals

Save an extra 10% or more on select hotels with Member Discounts

Access exclusive hotel deals, only with the Travelocity app

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Neighborhood
Neighborhood
Traveler experience
Traveler experience
Popular locations
Popular locations
Meal plans available
Meal plans available
Property amenities
Property amenities
Accessibility
Accessibility

Top Southeast Minnesota hotels

Hyatt House Rochester/Mayo Clinic Area

Hyatt House Rochester/Mayo Clinic Area

3 out of 5
110 Civic Center Drive NW Rochester MN
Fully refundableReserve now, pay when you stay
$169 nightly
The price is $195 total per night from Jun 30 to Jul 1
$195 total
Jun 30 - Jul 1
Total with taxes and fees
This hotel features an indoor pool and a gym. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. Enjoy the hot ...
"Difficult review to write The staff was excellent with me, very pleasant and accommodating The reason for my poor review is the location of the hotel situated directly beside the train tracks and crossing. Our first night 3 trains came by the hotel from 12:30am to 6:00am, each one blowing their whistle ..."

Reviewed on Jun 27, 2026

Opens in a new windowHyatt House Rochester/Mayo Clinic Area
Treasure Island Resort & Casino

Treasure Island Resort & Casino

3 out of 5
5734 Sturgeon Lake Road Welch MN
Fully refundableReserve now, pay when you stay
$98 nightly
The price is $111 total per night from Jul 1 to Jul 2
$111 total
Jul 1 - Jul 2
Total with taxes and fees
This hotel features a casino, a full-service spa, and a water park. Bring the family and enjoy the lazy river, children's club, and children's pool. Enjoy the ...
"Was an overall excellent experience being my first time ever at the property"

Reviewed on Jun 29, 2026

Opens in a new windowTreasure Island Resort & Casino
Express Suites Riverport Inn & Suites

Express Suites Riverport Inn & Suites

3 out of 5
900 Bruski Dr Winona MN
Fully refundableReserve now, pay when you stay
$120 nightly
The price is $134 total per night from Jun 30 to Jul 1
$134 total
Jun 30 - Jul 1
Total with taxes and fees
This hotel features a restaurant, an indoor pool, and a bar/lounge. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public ...
"All good but bed was stiff and lumpy"

Reviewed on Jun 28, 2026

Opens in a new windowExpress Suites Riverport Inn & Suites
Kahler Grand Hotel

Kahler Grand Hotel

3 out of 5
20 2nd Ave Sw Rochester MN
Fully refundableReserve now, pay when you stay
$144 nightly
The price is $165 total per night from Jul 4 to Jul 5
$165 total
Jul 4 - Jul 5
Total with taxes and fees
This smoke-free hotel includes 2 restaurants, an indoor pool, and a 24-hour gym. Traveling on business? Take advantage of the 24-hour business center, free WiFi ...
"2nd stay at Kahler Grand. Super convenient. Good bed & linens, front desk and valet parking staff are incredibly helpful. Quiet. Our room was small, but adequate. Small bathroom. Multiple restaurant options inside hotel or within easy walk. Charlton & Eisenberg are literally across the street, as ..."

Reviewed on Jun 27, 2026

Opens in a new windowKahler Grand Hotel
Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

2.5 out of 5
1517 16th St Sw Rochester MN
Fully refundableReserve now, pay when you stay
$79 nightly
The price is $91 total per night from Jul 12 to Jul 13
$91 total
Jul 12 - Jul 13
Total with taxes and fees
This hotel features a restaurant, an indoor pool, and a bar/lounge. Bring the family and enjoy the children's pool, waterslide, and arcade/game room. Enjoy the ...
"The beds were very comfortable. The rooms were cozy. The waterslide was a huge hit with my granddaughter. Couldn't keep her out of the pool! The only thing that was an issue was the ice machines were out of ice most of the time. We had to go from machine to machine just to get a full bucket. Overall, ..."

Reviewed on Jun 26, 2026

Opens in a new windowBest Western Rochester Hotel Mayo Clinic Area/St. Mary's
Kahler Inn and Suites - Mayo Clinic Area

Kahler Inn and Suites - Mayo Clinic Area

3.5 out of 5
9 3rd Ave Nw Rochester MN
Fully refundableReserve now, pay when you stay
$139 nightly
The price is $160 total per night from Jul 10 to Jul 11
$160 total
Jul 10 - Jul 11
Total with taxes and fees
This hotel features an indoor pool and a gym. Business travelers can take advantage of the free WiFi in public areas. Enjoy the free self-serve breakfast each ...
"Excellent hotel and customer service!"

Reviewed on Jun 29, 2026

Opens in a new windowKahler Inn and Suites - Mayo Clinic Area
Med City Inn & Suites - Mayo Clinic Area

Med City Inn & Suites - Mayo Clinic Area

2.5 out of 5
435 16th Ave Nw Rochester MN
Fully refundableReserve now, pay when you stay
$84 nightly
The price is $97 total per night from Jun 30 to Jul 1
$97 total
Jun 30 - Jul 1
Total with taxes and fees
2 indoor pools, a 24-hour gym, and a hot tub are all featured at this traditional motel. Bring the family and enjoy the children's pool, waterslide, and kid-friendly ...
"For some reason, they didn’t give me the king size room that I had reserved. No reason nor explanation given - i didn’t know til entering the room. Breakfast at 6:00 wasn’t ready. Oatmeal, pancake mix, hot hings tricked out between 6:00and 6:20."

Reviewed on Jun 28, 2026

Opens in a new windowMed City Inn & Suites - Mayo Clinic Area
La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S

La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S

3 out of 5
4353 Canal Pl SE Rochester MN
Fully refundableReserve now, pay when you stay
$76 nightly
The price is $87 total per night from Jul 5 to Jul 6
$87 total
Jul 5 - Jul 6
Total with taxes and fees
This hotel's 3 indoor pools and gym are among the featured amenities. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public ...
"Good"

Reviewed on Jun 27, 2026

Opens in a new windowLa Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S
Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

3 out of 5
401 6th St Sw Rochester MN
Fully refundableReserve now, pay when you stay
$114 nightly
The price is $131 total per night from Jul 5 to Jul 6
$131 total
Jul 5 - Jul 6
Total with taxes and fees
This hotel features an indoor pool, a 24-hour gym, and a restaurant. There's fun for all ages with a children's pool and an arcade/game room, and families will ...
Opens in a new windowCenterstone Plaza Hotel Soldiers Field - Mayo Clinic Area
Don't see what you're looking for?
See all available properties in Southeast Minnesota
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Cheap Southeast Minnesota hotels

Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Recent Southeast Minnesota hotel reviews by fellow wanderers

Explore More Ways to Travel with Travelocity