Book a hotel near Rookery Bay National Estuarine Research Reserve, Florida

Cabins, apartments, houseboats! We offer comfortable & private vacation rentals

Save an extra 10% or more on select hotels with Member Discounts

Access exclusive hotel deals, only with the Travelocity app

Check prices for these dates

Tonight
May 5 - May 6
Tomorrow
May 6 - May 7
This weekend
May 8 - May 10
Next weekend
May 15 - May 17

Filter by

Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Neighborhood
Neighborhood
Traveler experience
Traveler experience
Popular locations
Popular locations
Meal plans available
Meal plans available
Property amenities
Property amenities
Accessibility
Accessibility

Hotels near Rookery Bay National Estuarine Research Reserve

Compass by Margaritaville Hotel Naples

Compass by Margaritaville Hotel Naples

4 out of 5
4805 Tamiami Trl N Naples FL
Fully refundableReserve now, pay when you stay
$157 nightly
The price is $175 total per night from May 31 to Jun 1
$175 total
May 31 - Jun 1
Total with taxes and fees
This hotel features a restaurant, an outdoor pool, and a bar/lounge. Business travelers can take advantage of the 24-hour business center. Enjoy the 24-hour ...
All perfect!!!

Reviewed on May 5, 2026

Opens in a new windowCompass by Margaritaville Hotel Naples
Great Wolf Lodge Naples

Great Wolf Lodge Naples

3 out of 5
3900 City Gate Blvd N. Naples FL
A water park, 4 restaurants, and 3 outdoor pools are all featured at this smoke-free hotel. There's fun for all ages with a lazy river and a bowling alley, and ...
Una experiencia única e inolvidable para compartir en familia….Volvería mil veces más

Reviewed on May 4, 2026

Get rates
Opens in a new windowGreat Wolf Lodge Naples
Fairways Inn of Naples

Fairways Inn of Naples

3 out of 5
103 Palm River Blvd Naples FL
$80 nightly
The price is $89 total per night from May 27 to May 28
$89 total
May 27 - May 28
Total with taxes and fees
An outdoor pool, free self parking, and laundry facilities are featured at this hotel. Guests will appreciate free perks like continental breakfast and WiFi ...
Everything was lovely

Reviewed on May 4, 2026

Opens in a new windowFairways Inn of Naples
Naples Bay Resort & Marina

Naples Bay Resort & Marina

4 out of 5
1500 Fifth Ave S Naples FL
Fully refundableReserve now, pay when you stay
$249 nightly
The price is $276 total per night from May 10 to May 11
$276 total
May 10 - May 11
Total with taxes and fees
This smoke-free hotel features a full-service spa, a marina, and 4 restaurants. There's fun for all ages with a lazy river and a children's pool, and babysitting ...
Beautiful property. Restaurant choices incredible. The staff all seemed to go above and beyond with in person and digital messages asking if we needed anything. Was EXTREMELY impressed.

Reviewed on May 5, 2026

Opens in a new windowNaples Bay Resort & Marina
Trianon Bonita Bay

Trianon Bonita Bay

3.5 out of 5
3401 Bay Commons Dr Bonita Springs FL
Fully refundableReserve now, pay when you stay
$104 nightly
The price is $117 total per night from May 6 to May 7
$117 total
May 6 - May 7
Total with taxes and fees
This hotel features a restaurant, an outdoor pool, and a bar/lounge. Traveling on business? Take advantage of the business center and free WiFi in public areas. ...
It was okay. We only stayed for 2 nights. It wasn’t horrible but there was hair in the bathroom and odd smell in hotel. Room has a strange musty smell and the hotel itself does have a strange smell. Pool was small but okay. Beds were clean and comfortable. Small tv. Room was spacious. It served its ...

Reviewed on May 5, 2026

Opens in a new windowTrianon Bonita Bay
Hilton Naples

Hilton Naples

4 out of 5
5111 Tamiami Trl N Naples FL
Fully refundableReserve now, pay when you stay
$143 nightly
The price is $159 total per night from May 28 to May 29
$159 total
May 28 - May 29
Total with taxes and fees
This hotel features a restaurant, an outdoor pool, and a bar/lounge. Traveling on business? Take advantage of the free WiFi in public areas, laundry service, ...
Clean rooms and good location for a family stay. Kids enjoyed the pool and the complimentary shuttle to the beach is awesome.

Reviewed on May 5, 2026

Opens in a new windowHilton Naples
Hilton Marco Island Beach Resort and Spa

Hilton Marco Island Beach Resort and Spa

4 out of 5
560 S Collier Blvd Marco Island FL
Fully refundableReserve now, pay when you stay
$279 nightly
The price is $309 total per night from May 31 to Jun 1
$309 total
May 31 - Jun 1
Total with taxes and fees
A full-service spa, a 24-hour gym, and a restaurant are all featured at this resort. Spend a day at the beach parasailing, or relax with sun loungers and beach ...
Our room at the Hilton was beautiful and clean The staff very friendly and helpful

Reviewed on May 5, 2026

Opens in a new windowHilton Marco Island Beach Resort and Spa
Hyatt House Naples/5th Avenue

Hyatt House Naples/5th Avenue

3.5 out of 5
1345 5th Avenue South Naples FL
Fully refundableReserve now, pay when you stay
$169 nightly
The price is $188 total per night from May 25 to May 26
$188 total
May 25 - May 26
Total with taxes and fees
A marina, a 24-hour gym, and a restaurant are all featured at this smoke-free hotel. Traveling on business? Take advantage of the 24-hour business center and ...
Beautiful hotel and lobby. Well-maintained property and clean rooms. My kids loved the pool and there are plenty of shallow areas for little ones. The staff was very friendly. The breakfast was great and the coffee was better than some of the local coffee shops! Can't beat the proximity to shops/restaurants/beach. ...

Reviewed on May 5, 2026

Opens in a new windowHyatt House Naples/5th Avenue
Bayfront Inn Fifth Avenue

Bayfront Inn Fifth Avenue

3.5 out of 5
1221 5th Ave S Naples FL
$101 nightly
The price is $112 total per night from Jun 1 to Jun 2
$112 total
Jun 1 - Jun 2
Total with taxes and fees
A marina and an outdoor pool are featured at this smoke-free hotel. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public ...
We’ve stayed here many times with our dog as they are pet friendly. (Although the new $150 pet cleaning fee , on top of the nightly pet fee is a bit much) It’s in a great location walkable to 5th ave. It’s a little bit dated and the elevators are a little slow but it’s priced appropriately and it’s ...

Reviewed on May 4, 2026

Opens in a new windowBayfront Inn Fifth Avenue
Don't see what you're looking for?
See all available properties in Rookery Bay National Estuarine Research Reserve
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Rookery Bay National Estuarine Research Reserve Hotel & Travel Guide

Do you want to spend some time in Rookery Bay National Estuarine Research Reserve? You should secure accommodations as soon as you know your itinerary, as there is only 1 hotel option within a convenient driving distance of the center of Rookery Bay National Estuarine Research Reserve.

The Vacation Pool Homes- Marco Island, Southwest Coast Florida, which is the closest Travelocity-listed accommodation, can be found 7 miles (12 kilometers) from central Rookery Bay National Estuarine Research Reserve. Also, why not think about the Marco Island Marriott Beach Resort Golf Club & Spa, located in Southwest Coast Florida, which is 7 miles (12 kilometers) from the downtown area.

The Edgewater Beach Hotel can be found about 20 miles (36 kilometers) outside central Rookery Bay National Estuarine Research Reserve. An alternative place to stay is the The Escalante, which can be found 20 miles (33 kilometers) away. More hotel and apartment options close by include the Holiday Inn Club Vacations Marco Island Sunset Cove as well as the Marco Beach Ocean Resort.

After you have spent some time in Rookery Bay National Estuarine Research Reserve, schedule in a little time to explore the other cultural and scenic attractions of the South Florida area. Familiarize yourself with South Florida's lighthouses and also enjoy its beaches and everglades. Popular pastimes in this part of United States of America include hiking.

Bonita Springs is 35 miles (54 kilometers) north of Rookery Bay National Estuarine Research Reserve and features Coconut Point Mall and Bonita Beach Park. If you'd like to get to Bonita Springs, be sure to check out the Trianon Bonita Bay and Comfort Inn. 17 miles (27 kilometers) east of Rookery Bay National Estuarine Research Reserve, you'll find Everglades City, which boasts the Glades Haven Cozy Cabins and Ivey House. The Museum of the Everglades and Everglades Area Chamber of Commerce are frequented places to discover while in Everglades City.

If you're traveling into or out of Naples Municipal Airport and plan to book a Travelocity-listed room in the area, look at Naples Bay Resort or The Inn on Fifth.

Recent Rookery Bay National Estuarine Research Reserve hotel reviews by fellow wanderers

Naples Bay Resort & Marina

Naples Bay Resort & Marina

5 out of 5
Posted 3 hours ago
Travelocity Verified Review
"Beautiful property. Restaurant choices incredible. The staff all seemed to go above and beyond with in person and digital messages asking if we needed anything. Was EXTREMELY impressed."
A verified traveler stayed at Naples Bay Resort & Marina
Naples Bay Resort & Marina

Explore More Ways to Travel with Travelocity