Cheap Flights to San Juan Island from $49

Wander Wisely with exceptional service, 24/7 supportOpens in a new window

Feel at ease with free flight cancellations within 24 hours of booking

Change your flight without a fee on select flights

How Much Does it Cost To Fly To San Juan Island?

The cheapest prices found with in the last 7 days for return flights were $98 and $49 for one-way flights to San Juan Island for the period specified. Prices and availability are subject to change. Additional terms apply

Sat, Sep 13 - Sat, Sep 20
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$98 Roundtrip, just found
$98
Roundtrip
just found
Select Frontier Airlines flight, departing Sat, Sep 13 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Sat, Sep 20, priced at $98 just found
Fri, Oct 24 - Mon, Oct 27
BWI
Baltimore Washington Intl. Thurgood Marshall
SEA
Seattle - Tacoma Intl.
$207 Roundtrip, found 1 day ago
$207
Roundtrip
found 1 day ago
Select American Airlines flight, departing Fri, Oct 24 from Baltimore Washington Intl. Thurgood Marshall to Seattle - Tacoma Intl., returning Mon, Oct 27, priced at $207 found 1 day ago
OriginDestinationTravel DatesFlights From*
SEABellinghamSeptember 27 to October 4$107
BOSSeattleSeptember 24 to September 24$212
DCASeattleSeptember 6 to September 13$215
IADBellinghamAugust 30 to September 6$334
BOSBellinghamSeptember 12 to September 16$392
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
SEABellinghamJuly 6 to July 11$396
DCASeattleJuly 6 to July 9$441
BOSSeattleJuly 6 to July 10$514
*Prices include taxes and fees

San Juan Island SEA Flight Information

Traveling to
San Juan Island SEA
Lowest Price
$98
Number of Airlines Serving
6
Airlines Serving
Frontier Airlines, American Airlines
Number of Daily Flights
10
Airlines with Direct Flights
American Airlines, Alaska Airlines, Southwest Airlines, Finnair, Hawaiian Airlines, Air Tahiti Nui

Find The Perfect Hotel For After Your Flight

Amazing San Juan Island Accommodation Deals

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (987 reviews)
"Pros: It was easy to check into. The room was very clean. It had nice hot water. The person at the front desk was friendly. It is reasonably priced. It is centrally located. Cons: The room is small. Not much space to bend over and shave your legs in the shower. The bed seemed smaller than a queen. ..."

Reviewed on Jun 26, 2025

Get rates
The Orca Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our Top San Juan Island with Airport Shuttles

Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (917 reviews)
100/100 would stay again
"Charming little hotel with a very friendly staff!! Perfect for our 2 night stay on the San Juan Island. Walking distance to everything in Friday Harbor"

Reviewed on Jun 29, 2025

Get rates
Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Luxury Hotels in San Juan Island

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (987 reviews)
"Pros: It was easy to check into. The room was very clean. It had nice hot water. The person at the front desk was friendly. It is reasonably priced. It is centrally located. Cons: The room is small. Not much space to bend over and shave your legs in the shower. The bed seemed smaller than a queen. ..."

Reviewed on Jun 26, 2025

Get rates
The Orca Inn
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

Friday Harbor
Stay at this cottage in Friday Harbor. Enjoy free WiFi, a garden, and laundry facilities. Popular attractions San Juan Golf & Tennis Club and San Juan Island ...
10/10 Exceptional! (158 reviews)
Excellent property
"Very short drive into Friday Harbor. Beautiful view of the sound. Clean nice property. The only negative was spotty WiFi. Could be because of their location. Short drive to cattle point and American camp national park. Very enjoyable!!"

Reviewed on Jun 23, 2025

Get rates
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (917 reviews)
100/100 would stay again
"Charming little hotel with a very friendly staff!! Perfect for our 2 night stay on the San Juan Island. Walking distance to everything in Friday Harbor"

Reviewed on Jun 29, 2025

Get rates
Earthbox Inn & Spa
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.6/10 Excellent! (342 reviews)
"Excellent and prompt communication from staff. Easy remote check-in. Very lovely space and comfortable accommodations."

Reviewed on Feb 23, 2025

Get rates
Bird Rock Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in San Juan Island

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Friday Harbor
Book a stay at this beach vacation home in Friday Harbor. Enjoy a beach locale, a garden, and laundry facilities. Our guests praise the property condition in ...
9.8/10 Exceptional! (329 reviews)
Wonderful stay
"I came to the San Juan Islands for a wedding and decided to splurge on a place to stay that wasn’t your ordinary hotel. I did not realize it was as far out of town, however, it was perfect. The view, the house, the beds, the fire pit, long walks, truly it was fantastic. Thank you to our host!!"

Reviewed on Jun 16, 2025

Get rates
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (917 reviews)
100/100 would stay again
"Charming little hotel with a very friendly staff!! Perfect for our 2 night stay on the San Juan Island. Walking distance to everything in Friday Harbor"

Reviewed on Jun 29, 2025

Get rates
Earthbox Inn & Spa
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.4/10 Very Good! (1,000 reviews)
"N/a"

Reviewed on Jun 30, 2025

Get rates
Friday Harbor Suites
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free
Friday Harbor Grand B&B

Friday Harbor Grand B&B

3 out of 5
345 Blair Ave, Friday Harbor, WA
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions San Juan Islands Museum of Art and San Juan ...
9.6/10 Exceptional! (131 reviews)
"Wow, Farhad really does a good job. This is a nice BnB close to the Friday harbor ferry. Rooms are nice and the owner is a gem. He plays classical piano in the evening and makes farm-to-table breakfast using his backyard garden and 250 year old sour dough starter. We had a great time!"

Reviewed on Jun 29, 2025

Get rates
Friday Harbor Grand B&B
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Best San Juan Island Flight and Hotel Packages

San Juan Island flight + hotel packages - economy flights

Price found within the past 48 hours. Click for updated prices.
Emerald Queen Hotel and Casino - Tacoma

Emerald Queen Hotel and Casino - Tacoma

4 out of 5
Save 100% on your flight
per person
Aug 11 - Aug 15
found 1 day ago
Roundtrip flight included
Denver (DEN) to Seattle (SEA)
1 Hotel Seattle

1 Hotel Seattle

5 out of 5
Save 100% on your flight
per person
Aug 6 - Aug 10
found 1 day ago
Roundtrip flight included
Denver (DEN) to Seattle (SEA)
The Inn at Virginia Mason

The Inn at Virginia Mason

2.5 out of 5
Save 100% on your flight
per person
Aug 14 - Aug 19
found 1 day ago
Roundtrip non-stop flight included
Dallas (DAL) to Seattle (SEA)
Don't see what you're looking for?
See all available trips from Denver to San Juan Island
View all trips

San Juan Island flight + hotel packages - premium economy flights

Price found within the past 48 hours. Click for updated prices.
citizenM Seattle Pioneer Square

citizenM Seattle Pioneer Square

4 out of 5
per person
Aug 6 - Aug 10
found 3 hours ago
Roundtrip flight included
San Francisco (SFO) to Seattle (SEA)
1 Hotel Seattle

1 Hotel Seattle

5 out of 5
Save 100% on your flight
per person
Aug 6 - Aug 10
found 2 hours ago
Roundtrip flight included
San Francisco (SFO) to Seattle (SEA)
Lotte Hotel Seattle

Lotte Hotel Seattle

5 out of 5
per person
Aug 6 - Aug 10
found 3 hours ago
Roundtrip flight included
San Francisco (SFO) to Seattle (SEA)
Don't see what you're looking for?
See all available trips from San Francisco to San Juan Island
View all trips

San Juan Island flight + hotel packages - first class flights

Price found within the past 48 hours. Click for updated prices.
Mediterranean Inn

Mediterranean Inn

3 out of 5
per person
Aug 7 - Aug 11
found 8 hours ago
Roundtrip flight included
Denver (DEN) to Seattle (SEA)
1 Hotel Seattle

1 Hotel Seattle

5 out of 5
Save 100% on your flight
per person
Aug 7 - Aug 11
found 8 hours ago
Roundtrip flight included
Denver (DEN) to Seattle (SEA)
Lotte Hotel Seattle

Lotte Hotel Seattle

5 out of 5
per person
Aug 7 - Aug 11
found 8 hours ago
Roundtrip flight included
Denver (DEN) to Seattle (SEA)
Don't see what you're looking for?
See all available trips from Denver to San Juan Island
View all trips

Need a Car For After Your Flight?

Special

  • 5 people
  • Unlimited mileage
Seattle, Washington, USA

$39

$124 total
found 9 hours ago
Special undefined

Economy

  • 5 people
  • Unlimited mileage
Seattle, Washington, USA

$41

$128 total
found 9 hours ago
Economy undefined

Compact

  • 5 people
  • Unlimited mileage
Seattle, Washington, USA

$41

$130 total
found 9 hours ago
Compact undefined

Midsize

  • 5 people
  • Unlimited mileage
Seattle, Washington, USA

$42

$131 total
found 9 hours ago
Midsize undefined
Lowest prices found within the past 9 hours. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

Can I fly to San Juan Island right now?
This depends on various factors, for example, where you're flying from and the COVID-19 restrictions in your destination. Before booking your flight to San Juan Island, be sure to check official government websites for the latest info. Travelocity's Covid-19 Travel Advisor also has useful details about travel during the COVID-19 pandemic, including restrictions, quarantine and social distancing rules for your destination and many others.
How much is the cheapest flight to San Juan Island?
Travelers snapped up a roundtrip flight to San Juan Island for as little as $98 within the last seven days. If you find a fare you like, lock it in fast. Cheap deals don't stick around for long! This price was available on Travelocity for flights to San Juan Island departing within the next year. Prices and availability are subject to change. Additional terms apply.
If I cannot travel due to COVID-19, can I change my booking to a later date?
Discover the answers you're after on our Customer Service Portal link. Rules regarding COVID-19 can vary between carriers, so have a look over the terms and conditions of your tickets to San Juan Island to learn more.
What is the cheapest month to fly to San Juan Island?
September is the cheapest time to jet to San Juan Island --- that's based on Travelocity's direct return flight demand between January and December last year. We're here to help you score a fantastic deal so you can start planning your escape today.
How can I check my flight status to San Juan Island?
"Trips" has your back when it comes to details related to your flight to San Juan Island. The Travelocity customer portal allows you to manage everything from one place, from looking up your flight status to updating or canceling your booking. Click on Trips at the top right of the Travelocity homepage and then create a free account in seconds. Alternatively, download the Travelocity app and access your information while you're on the move. Whether you have the family flying with you or you're a lone adventurer, all your travel plans are in the palm of your hand.
How do I find the best deals on flights to San Juan Island?
Be flexible with your travel dates and you're likely to find a sensational deal. When searching for flights on Travelocity, click "Flexible dates" above your results to compare prices with surrounding days. Also try to book ahead of time and avoid peak periods. In the last seven days, the best price for a roundtrip flight to San Juan Island was $98. This price was available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
Why should I book my flight to San Juan Island with Travelocity?
Where to begin! With cheap flights to San Juan Island, accommodations and activities, you'll find all you need to wander wisely with Travelocity. Reserve your cheap family flights and take advantage of our 24/7 customer assistance and free cancellations on select airlines if necessary. Our goal is to offer hassle-free travel every time you book with us so that you can spend less time on the nitty-gritty and more time making memories with your travel buddies.
What are the most popular flight routes to San Juan Island?
Check out these top flight routes to San Juan Island and start organizing you next amazing adventure:

  • Los Angeles, CA (LAX-Los Angeles Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 5,286 flights a month.
  • Spokane, WA (GEG-Spokane Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 4,277 flights a month.
  • Anchorage, AK (ANC-Ted Stevens Anchorage Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 4,030 flights a month.

How much is a flight to San Juan Island on average?
In the last seven days, roundtrip flights to San Juan Island cost between $98 and $514. No matter your bank balance, we've got some great deals to help you keep within budget. These prices were available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
How long is the average flight to San Juan Island?
The duration of a direct flight to San Juan Island differs, but here you can check out the average travel times for a few top routes:

  • Los Angeles, CA (LAX-Los Angeles Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 2 hours and 53 minutes
  • Spokane, WA (GEG-Spokane Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 1 hour and 18 minutes
  • Anchorage, AK (ANC-Ted Stevens Anchorage Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 3 hours and 18 minutes

What can I expect on a flight to San Juan Island?
This depends on factors such as your airline and where you're flying from. Many airlines provide things like warm meals, drinks and entertainment on long-haul services. Whether you're seeking first class flights to San Juan Island or cheap flights for family vacations, you'll be looked after from the minute you take off to the moment you land.

Plane Tickets To San Juan Island

Although you may try and resist the urge, you know that when the travel bug comes, there is only one way to get rid of it. Thankfully, Travelocity is here to help nip that travel bug in the bud with great deals on flights to San Juan Island. Browse through our inventory to explore a wide range of cheap flights to San Juan Island to solidify your next big trip out of town. Whether you are heading out on a business trip, exploring a place you have never been for pleasure or are bringing the family on the annual vacation, we have the perfect getaway waiting for you. In no time, you will be day dreaming of your plane landing in San Juan Island as you anxiously await to exit the plane and explore what San Juan Island has to offer. Considering all the amazing local food and culture in San Juan Island, we won't hold this against you.

When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Island to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Island without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Island with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Island today!

*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.