Cheap Flights to San Juan Island from $42

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How Much Does it Cost To Fly To San Juan Island?

The cheapest prices found with in the last 7 days for return flights were $94 and $42 for one-way flights to San Juan Island for the period specified. Prices and availability are subject to change. Additional terms apply

Thu, Dec 4 - Thu, Dec 11
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$94 Roundtrip, just found
$94
Roundtrip
just found
Select Frontier Airlines flight, departing Thu, Dec 4 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Thu, Dec 11, priced at $94 just found
Tue, Nov 4 - Wed, Nov 5
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$98 Roundtrip, found 2 days ago
$98
Roundtrip
found 2 days ago
Select Alaska Airlines flight, departing Tue, Nov 4 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Wed, Nov 5, priced at $98 found 2 days ago
OriginDestinationTravel DatesFlights From*
SEABellinghamOctober 4 to October 11$117
BWISeattleDecember 16 to January 6$185
BOSSeattleOctober 7 to October 18$190
BWIBellinghamOctober 1 to October 7$354
BOSBellinghamNovember 1 to November 8$380
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
SEABellinghamSeptember 20 to September 28$303
BOSSeattleSeptember 21 to September 30$374
DCASeattleSeptember 21 to September 23$435
IADBellinghamSeptember 20 to September 23$992
*Prices include taxes and fees

San Juan Island Flight Information

Traveling to
San Juan Island
Lowest Price
$94
Number of Airlines Serving
Airlines Serving
Alaska Airlines, Frontier Airlines
Number of Daily Flights
Airlines with Direct Flights

Find The Perfect Hotel For After Your Flight

Amazing San Juan Island Accommodation Deals

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
$86 nightly
The price is $96 total per night from Oct 2 to Oct 3
$96 total
Oct 2 - Oct 3
Total with taxes and fees
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.8/10 Good! (1,001 reviews)
"clean"

Reviewed on Sep 3, 2025

Opens in a new windowThe Orca Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our Top San Juan Island with Airport Shuttles

Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street, Friday Harbor, WA
$225 nightly
The price is $249 total per night from Oct 1 to Oct 2
$249 total
Oct 1 - Oct 2
Total with taxes and fees
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (976 reviews)
"The family room of the hotel is surprisingly great. It's basically two rooms for one unit with two baths. And the staffs are very friendly."

Reviewed on Sep 8, 2025

Opens in a new windowEarthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Luxury Hotels in San Juan Island

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
$86 nightly
The price is $96 total per night from Oct 2 to Oct 3
$96 total
Oct 2 - Oct 3
Total with taxes and fees
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.8/10 Good! (1,001 reviews)
"clean"

Reviewed on Sep 3, 2025

Opens in a new windowThe Orca Inn
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

Friday Harbor
Stay at this cottage in Friday Harbor. Enjoy free WiFi, a garden, and laundry facilities. Popular attractions San Juan Golf & Tennis Club and San Juan Island ...
10/10 Exceptional! (167 reviews)
"Enjoyed the country setting with a view of the ocean along with the flowers.The cottage was very clean and had everything you needed. Be sure to check out the bakery by the airport in Friday Harbor along with a whale watching trip."

Reviewed on Sep 6, 2025

Get rates
Opens in a new windowWATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street, Friday Harbor, WA
$225 nightly
The price is $249 total per night from Oct 1 to Oct 2
$249 total
Oct 1 - Oct 2
Total with taxes and fees
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (976 reviews)
"The family room of the hotel is surprisingly great. It's basically two rooms for one unit with two baths. And the staffs are very friendly."

Reviewed on Sep 8, 2025

Opens in a new windowEarthbox Inn & Spa
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Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street, Friday Harbor, WA
$194 nightly
The price is $215 total per night from Oct 1 to Oct 2
$215 total
Oct 1 - Oct 2
Total with taxes and fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.8/10 Excellent! (354 reviews)
Weekend getaway!
"Great location for walking around town. Loved Friday Harbor."

Reviewed on Jul 19, 2025

Opens in a new windowBird Rock Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in San Juan Island

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Friday Harbor
Book a stay at this beach vacation home in Friday Harbor. Enjoy a beach locale, a garden, and laundry facilities. Our guests praise the property condition in ...
9.8/10 Exceptional! (333 reviews)
"Ver nice location and neat property with great views!"

Reviewed on Sep 9, 2025

Get rates
Opens in a new windowWestcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street, Friday Harbor, WA
$225 nightly
The price is $249 total per night from Oct 1 to Oct 2
$249 total
Oct 1 - Oct 2
Total with taxes and fees
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (976 reviews)
"The family room of the hotel is surprisingly great. It's basically two rooms for one unit with two baths. And the staffs are very friendly."

Reviewed on Sep 8, 2025

Opens in a new windowEarthbox Inn & Spa
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street, Friday Harbor, WA
$178 nightly
The price is $198 total per night from Sep 21 to Sep 22
$198 total
Sep 21 - Sep 22
Total with taxes and fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.4/10 Very Good! (1,005 reviews)
"Charming hotel with lots of character and friendly staff. The room was clean but had a lingering cigarette smell, which was a bit disappointing. It got warm in the living area, so we opened the sliding glass door—though a screen would’ve been nice. I didn’t keep it open long since I was worried about ..."

Reviewed on Sep 9, 2025

Opens in a new windowFriday Harbor Suites
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Friday Harbor Grand B&B

Friday Harbor Grand B&B

3 out of 5
345 Blair Ave, Friday Harbor, WA
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions San Juan Islands Museum of Art and San Juan ...
9.6/10 Exceptional! (136 reviews)
"We enjoyed a 3 night stay at this beautiful property in early September. We walked up the hill from the ferry to a warm welcome from Farhad who gave us an overview of the property, what to expect form our stay, tips on seeing the island, and restaurant recommendations. He then led us to our room, ..."

Reviewed on Sep 10, 2025

Get rates
Opens in a new windowFriday Harbor Grand B&B
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Best San Juan Island Flight and Hotel Packages

San Juan Island flight + hotel packages - economy flights

Price found within the past 48 hours. Click for updated prices.
Americas Best Value Inn Lynnwood Seattle

Americas Best Value Inn Lynnwood Seattle

2.5 out of 5
Price was $342, price is now $263 per person
$263
per person
Oct 20 - Oct 24
found 6 hours ago
Roundtrip flight included
Denver (DEN) to Seattle (SEA)
1 Hotel Seattle

1 Hotel Seattle

5 out of 5
Save 100% on your flight
Price was $1,720, price is now $1,160 per person
$1,160
per person
Oct 21 - Oct 25
found 24 hours ago
Roundtrip flight included
Anchorage (ANC) to Seattle (SEA)
Hotel Max

Hotel Max

3.5 out of 5
Price was $884, price is now $680 per person
$680
per person
Oct 21 - Oct 25
found 24 hours ago
Roundtrip flight included
Anchorage (ANC) to Seattle (SEA)
Don't see what you're looking for?
See all available trips from Denver to San Juan Island
View all trips

San Juan Island flight + hotel packages - first class flights

Price found within the past 48 hours. Click for updated prices.
citizenM Seattle Pioneer Square

citizenM Seattle Pioneer Square

4 out of 5
Price was $1,501, price is now $1,248 per person
$1,248
per person
Oct 16 - Oct 21
just found
Roundtrip flight included
Houston (IAH) to Seattle (SEA)
1 Hotel Seattle

1 Hotel Seattle

5 out of 5
Price was $2,416, price is now $1,797 per person
$1,797
per person
Oct 16 - Oct 21
just found
Roundtrip flight included
Houston (IAH) to Seattle (SEA)
Lotte Hotel Seattle

Lotte Hotel Seattle

5 out of 5
Price was $2,221, price is now $1,804 per person
$1,804
per person
Oct 16 - Oct 21
just found
Roundtrip flight included
Houston (IAH) to Seattle (SEA)
Don't see what you're looking for?
See all available trips from Houston to San Juan Island
View all trips

Need a Car For After Your Flight?

Special

  • 4 people
  • Unlimited mileage
Seatac, Washington, USA

$20

$72 total
found 8 hours ago
Special undefined

Economy

  • 5 people
  • Unlimited mileage
Seatac, Washington, USA

$23

$80 total
found 8 hours ago
Economy undefined

Midsize

  • 5 people
  • Unlimited mileage
Seatac, Washington, USA

$26

$88 total
found 8 hours ago
Midsize undefined

Compact

  • 5 people
  • Unlimited mileage
Seatac, Washington, USA

$28

$93 total
found 2 hours ago
Compact undefined
Lowest prices found within the past 8 hours. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

Can I fly to San Juan Island right now?
This depends on various factors, for example, where you're flying from and the COVID-19 restrictions in your destination. Before booking your flight to San Juan Island, be sure to check official government websites for the latest info. Travelocity's Covid-19 Travel Advisor also has useful details about travel during the COVID-19 pandemic, including restrictions, quarantine and social distancing rules for your destination and many others.
How much is the cheapest flight to San Juan Island?
Travelers snapped up a roundtrip flight to San Juan Island for as little as $94 within the last seven days. If you find a fare you like, lock it in fast. Cheap deals don't stick around for long! This price was available on Travelocity for flights to San Juan Island departing within the next year. Prices and availability are subject to change. Additional terms apply.
If I cannot travel due to COVID-19, can I change my booking to a later date?
Discover the answers you're after on our Customer Service Portal link. Rules regarding COVID-19 can vary between carriers, so have a look over the terms and conditions of your tickets to San Juan Island to learn more.
What is the cheapest month to fly to San Juan Island?
December is the cheapest time to jet to San Juan Island — that's based on Travelocity's direct return flight demand between January and December last year. We're here to help you score a fantastic deal so you can start planning your escape today.
How can I check my flight status to San Juan Island?
"Trips" has your back when it comes to details related to your flight to San Juan Island. The Travelocity customer portal allows you to manage everything from one place, from looking up your flight status to updating or canceling your booking. Click on Trips at the top right of the Travelocity homepage and then create a free account in seconds. Alternatively, download the Travelocity app and access your information while you're on the move. Whether you have the family flying with you or you're a lone adventurer, all your travel plans are in the palm of your hand.
How do I find the best deals on flights to San Juan Island?
Be flexible with your travel dates and you're likely to find a sensational deal. When searching for flights on Travelocity, click "Flexible dates" above your results to compare prices with surrounding days. Also try to book ahead of time and avoid peak periods. In the last seven days, the best price for a roundtrip flight to San Juan Island was $94. This price was available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
Why should I book my flight to San Juan Island with Travelocity?
Where to begin! With cheap flights to San Juan Island, accommodations and activities, you'll find all you need to wander wisely with Travelocity. Reserve your cheap family flights and take advantage of our 24/7 customer assistance and free cancellations on select airlines if necessary. Our goal is to offer hassle-free travel every time you book with us so that you can spend less time on the nitty-gritty and more time making memories with your travel buddies.
What are the most popular flight routes to San Juan Island?
Check out these top flight routes to San Juan Island and start organizing you next amazing adventure:

  • Los Angeles, CA (LAX-Los Angeles Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 5,286 flights a month.
  • Spokane, WA (GEG-Spokane Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 4,277 flights a month.
  • Anchorage, AK (ANC-Ted Stevens Anchorage Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 4,030 flights a month.

How much is a flight to San Juan Island on average?
In the last seven days, roundtrip flights to San Juan Island cost between $94 and $992. No matter your bank balance, we've got some great deals to help you keep within budget. These prices were available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
How long is the average flight to San Juan Island?
The duration of a direct flight to San Juan Island differs, but here you can check out the average travel times for a few top routes:

  • Los Angeles, CA (LAX-Los Angeles Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 2 hours and 53 minutes
  • Spokane, WA (GEG-Spokane Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 1 hour and 18 minutes
  • Anchorage, AK (ANC-Ted Stevens Anchorage Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 3 hours and 18 minutes

What can I expect on a flight to San Juan Island?
This depends on factors such as your airline and where you're flying from. Many airlines provide things like warm meals, drinks and entertainment on long-haul services. Whether you're seeking first class flights to San Juan Island or cheap flights for family vacations, you'll be looked after from the minute you take off to the moment you land.

Plane Tickets To San Juan Island

Although you may try and resist the urge, you know that when the travel bug comes, there is only one way to get rid of it. Thankfully, Travelocity is here to help nip that travel bug in the bud with great deals on flights to San Juan Island. Browse through our inventory to explore a wide range of cheap flights to San Juan Island to solidify your next big trip out of town. Whether you are heading out on a business trip, exploring a place you have never been for pleasure or are bringing the family on the annual vacation, we have the perfect getaway waiting for you. In no time, you will be day dreaming of your plane landing in San Juan Island as you anxiously await to exit the plane and explore what San Juan Island has to offer. Considering all the amazing local food and culture in San Juan Island, we won't hold this against you.

When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Island to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Island without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Island with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Island today!

*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.