Cheap Flights to San Juan Island from $87

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How Much Does it Cost To Fly To San Juan Island?

The cheapest prices found with in the last 7 days for return flights were $131 and $87 for one-way flights to San Juan Island for the period specified. Prices and availability are subject to change. Additional terms apply

OriginDestinationTravel DatesFlights From*
SEABellinghamSeptember 10 to September 10$131
BOSSeattleAugust 26 to September 9$197
BWISeattleSeptember 15 to September 27$207
BOSBellinghamSeptember 1 to September 9$298
IADBellinghamAugust 27 to September 3$388
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
DCASeattleJune 14 to June 20$400
BOSSeattleJune 15 to June 22$576
*Prices include taxes and fees

San Juan Island Flight Information

Traveling to
San Juan Island
Lowest Price
$131
Number of Airlines Serving
Airlines Serving
American Airlines
Number of Daily Flights
Airlines with Direct Flights

Find The Perfect Hotel For After Your Flight

Amazing San Juan Island Accommodation Deals

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (977 reviews)
Teeny tiny but just fine
"Super tiny room but it was clean and perfect for a night on the island. Paid $100 for a queen bed the night before a half marathon race, definitely a deal snag with some of the pricier options. They provide coffee in the morning, but the small room really encourages you to explore the island! Our ..."

Reviewed on May 27, 2025

The Orca Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our Top San Juan Island with Airport Shuttles

Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (904 reviews)
"Clean, comfortable rooms. Nice property. Friendly staff."

Reviewed on Jun 9, 2025

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Luxury Hotels in San Juan Island

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (977 reviews)
Teeny tiny but just fine
"Super tiny room but it was clean and perfect for a night on the island. Paid $100 for a queen bed the night before a half marathon race, definitely a deal snag with some of the pricier options. They provide coffee in the morning, but the small room really encourages you to explore the island! Our ..."

Reviewed on May 27, 2025

The Orca Inn
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

Friday Harbor
Stay at this cottage in Friday Harbor. Enjoy free WiFi, a garden, and laundry facilities. Popular attractions San Juan Golf & Tennis Club and San Juan Island ...
Wonderful country escape with great view and hosts
"The cottage was the perfect place for a wonderful get away on San Juan Island. Mary is a very creative artist and has decorated the cottage beautifully and provided absolutely everything we needed for our stay. The gardens are filled with fantastic flowers and the patio and view are a great place ..."

Reviewed on Oct 17, 2024

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (904 reviews)
"Clean, comfortable rooms. Nice property. Friendly staff."

Reviewed on Jun 9, 2025

Earthbox Inn & Spa
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Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.6/10 Excellent! (340 reviews)
"Excellent and prompt communication from staff. Easy remote check-in. Very lovely space and comfortable accommodations."

Reviewed on Feb 23, 2025

Bird Rock Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in San Juan Island

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Friday Harbor
Book a stay at this beach vacation home in Friday Harbor. Enjoy a beach locale, a garden, and laundry facilities. Our guests praise the property condition in ...
9.8/10 Exceptional! (326 reviews)
Incredible property on the Bay
"Would absolutely rent again when we return to San Juan. The property is incredibly beautiful and well done. Having a dock, kayaks, and all the amenities for a quiet stay on San Juan"

Reviewed on Jun 3, 2025

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (904 reviews)
"Clean, comfortable rooms. Nice property. Friendly staff."

Reviewed on Jun 9, 2025

Earthbox Inn & Spa
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.4/10 Very Good! (996 reviews)
"Cute little hotel. Staff was friendly. Coffee and food was amazing in the coffee shop."

Reviewed on Jun 11, 2025

Friday Harbor Suites
Save an average of 15% on thousands of hotels when you're signed in
Friday Harbor Grand B&B

Friday Harbor Grand B&B

3 out of 5
345 Blair Ave, Friday Harbor, WA
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions San Juan Islands Museum of Art and San Juan ...
9.6/10 Exceptional! (129 reviews)
A Class of Its Own
"We enjoyed our stay. Farhad was an excellent host. He prepared and served delicious breakfast with ingredients from his garden. Also treated the guests with freshly baked cookies every afternoon, and an hour of his piano and wine soirée in the evening. We wholeheartedly recommend Friday Harbor ..."

Reviewed on Jun 5, 2025

Friday Harbor Grand B&B
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Best San Juan Island Flight and Hotel Packages

San Juan Island flight + hotel packages - economy flights

Price found within the past 48 hours. Click for updated prices.
1 Hotel Seattle
Sophari Suites at Bellevue
Thompson Seattle, by Hyatt
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See all available trips from Denver to San Juan Island
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San Juan Island flight + hotel packages - premium economy flights

Price found within the past 48 hours. Click for updated prices.
Coast Seattle Downtown Hotel by APA
1 Hotel Seattle
Mediterranean Inn
Don't see what you're looking for?
See all available trips from Dallas to San Juan Island
View all trips

San Juan Island flight + hotel packages - first class flights

Price found within the past 48 hours. Click for updated prices.
Mediterranean Inn
1 Hotel Seattle
Lotte Hotel Seattle
Don't see what you're looking for?
See all available trips from Dallas to San Juan Island
View all trips

Need a Car For After Your Flight?

Lowest prices found within the past 7 hours. Prices and availability subject to change. Additional terms may apply.

Plane Tickets To San Juan Island

Although you may try and resist the urge, you know that when the travel bug comes, there is only one way to get rid of it. Thankfully, Travelocity is here to help nip that travel bug in the bud with great deals on flights to San Juan Island. Browse through our inventory to explore a wide range of cheap flights to San Juan Island to solidify your next big trip out of town. Whether you are heading out on a business trip, exploring a place you have never been for pleasure or are bringing the family on the annual vacation, we have the perfect getaway waiting for you. In no time, you will be day dreaming of your plane landing in San Juan Island as you anxiously await to exit the plane and explore what San Juan Island has to offer. Considering all the amazing local food and culture in San Juan Island, we won't hold this against you.

When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Island to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Island without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Island with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Island today!

*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.