Flights to San Juan Islands

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How Much Does it Cost To Fly To San Juan Islands?

The cheapest prices found with in the last 7 days for return flights were $106 and $55 for one-way flights to San Juan Islands for the period specified. Prices and availability are subject to change. Additional terms apply

OriginDestinationTravel DatesFlights From*
BOSSeattleJan 29 - Feb 1$133
IADSeattleJan 12 - Jan 29$137
SEABellinghamJan 6 - Jan 6$193
BFIFriday HarborJan 10 - Jan 11$320
BOSBellinghamFeb 3 - Feb 13$345
IADBellinghamJan 18 - Jan 25$401
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
IADSeattleDec 11 - Dec 14$338
BFIFriday HarborDec 11 - Dec 12$341
SEABellinghamDec 12 - Jan 1$402
BOSSeattleDec 11 - Dec 18$467
*Prices include taxes and fees

San Juan Islands SEA Flight Information

Traveling to San Juan Islands SEA
Lowest Price $106
Number of Airlines Serving 2
Airlines Serving Spirit Airlines, Frontier Airlines, Delta
Number of Daily Flights 3
Airlines with Direct Flights Alaska Airlines, Korean Air

Flight Review

Find The Perfect Hotel For After Your Flight

Amazing San Juan Islands Accommodation Deals

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
The price is $78 per night from Dec 25 to Dec 25
Situated in Friday Harbor, this motel is within a 15-minute walk of San Juan Islands Museum of Art and Whale Museum. San Juan Island National Historic Park and ...
4/5 Very Good! (11 reviews)
"Rooms are very small but adequate. Deluxe rooms are actually 2 regular rooms with the wall between them removed. Thus, there are 2 beds and 2 bathrooms and lots more space."

Reviewed on Aug 5, 2021

The Orca Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our Top San Juan Islands with Airport Shuttles

Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is $179 per night from Dec 12 to Dec 12
Located in the heart of Friday Harbor, this spa hotel is 0.3 mi (0.5 km) from Whale Museum and within 9 mi (15 km) of English Camp and Lime Kiln Point State ...
4.1/5 Very Good! (14 reviews)
"the location was only a few blocks from downtown. The room was small but certainly adequate. Enjoyed the jacuzzi tub."

Reviewed on Feb 13, 2020

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Luxury Hotels in San Juan Islands

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
The price is $78 per night from Dec 25 to Dec 25
Situated in Friday Harbor, this motel is within a 15-minute walk of San Juan Islands Museum of Art and Whale Museum. San Juan Island National Historic Park and ...
4/5 Very Good! (11 reviews)
"Rooms are very small but adequate. Deluxe rooms are actually 2 regular rooms with the wall between them removed. Thus, there are 2 beds and 2 bathrooms and lots more space."

Reviewed on Aug 5, 2021

The Orca Inn
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is $179 per night from Dec 12 to Dec 12
Located in the heart of Friday Harbor, this spa hotel is 0.3 mi (0.5 km) from Whale Museum and within 9 mi (15 km) of English Camp and Lime Kiln Point State ...
4.1/5 Very Good! (14 reviews)
"the location was only a few blocks from downtown. The room was small but certainly adequate. Enjoyed the jacuzzi tub."

Reviewed on Feb 13, 2020

Earthbox Inn & Spa
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street, Friday Harbor, WA
The price is $145 per night from Dec 30 to Dec 30
Located in the heart of Friday Harbor, this spa hotel is 0.1 mi (0.1 km) from Whale Museum and within 9 mi (15 km) of American Camp Visitor Center and English ...
4.5/5 Wonderful! (8 reviews)
"This room had no windows, the shower and sink was located in the bedroom it’s self; it was one room; the toilet alone was in it’s own tiny room with a door. The shower was open to the room and the sink was next to the bed."

Reviewed on Oct 25, 2020

Bird Rock Hotel
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Deer Harbor Inn

Deer Harbor Inn

3 out of 5
33 Inn Lane, Deer Harbor, WA
Situated in Deer Harbor, this hotel is 1.3 mi (2.1 km) from Skull Island State Park and 2.6 mi (4.2 km) from Jones Island State Park. West Sound Marina and Turtleback ...
3.5/5 Good! (4 reviews)
"Cozy room on a beautiful property. If available definitely go to Matthew’s smokehouse & Deli just a short walk from the Inn."

Reviewed on Feb 17, 2021

Deer Harbor Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in San Juan Islands

OVER THE HILL FARM - A VACATION OUT OF THE ORDINARY  (no work required)
Great for families

OVER THE HILL FARM - A VACATION OUT OF THE ORDINARY (no work required)

Friday Harbor, WA
This family-friendly Friday Harbor farm stay is located in a rural location, within 1 mi (2 km) of San Juan Historical Society and Museum and San Juan Islands ...
Families like: kitchen, outdoor tennis court, bicycle rentals, extra beds/cribs
OVER THE HILL FARM - A VACATION OUT OF THE ORDINARY (no work required)
Historic lodge, ocean-front, private beach, kayaks, hot tub, and more!
Great for families

Historic lodge, ocean-front, private beach, kayaks, hot tub, and more!

Eastsound, WA
Nestled on the beach, this Eastsound lodge is within 3 mi (5 km) of North Beach, Eastsound Beaches, and Moran State Park. The Funhouse Discovery Center and Orcas ...
Families like: kitchen, on the beach, games and toys, washer and dryer
Historic lodge, ocean-front, private beach, kayaks, hot tub, and more!
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Great for families

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Friday Harbor, WA
Nestled on the beach, this Friday Harbor vacation home is within a 10-minute walk of Wescott Bay and San Juan Island National Historic Park. San Juan Islands ...
Families like: kitchen, on the beach, washer and dryer
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
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Waterfront Village Beach House
Great for families

Waterfront Village Beach House

Lopez Island, WA
Nestled on the beach, this Lopez Island vacation home is within 6 mi (10 km) of Spencer Spit State Park, Odlin County Park, and Lopez Island Golf Club. West ...
Families like: kitchen, on the beach, games and toys, washer and dryer
Waterfront Village Beach House
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Best San Juan Islands Flight and Hotel Packages

San Juan Islands flight + hotel packages - economy flights

Bellevue Club Hotel
Seatac Inn
Hampton Inn & Suites by Hilton Seattle/Northgate
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See all available trips from Houston to San Juan Islands
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San Juan Islands flight + hotel packages - first class flights

The Oxford by Kasa
Lotte Hotel Seattle
Hotel Ändra
Don't see what you're looking for?
See all available trips from Chicago to San Juan Islands
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Need a Car For After Your Flight?

Plane Tickets To San Juan Islands

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When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Islands to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Islands without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Islands with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Islands today!

*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.