Cheap Flights to San Juan Island from $69

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How Much Does it Cost To Fly To San Juan Island?

The cheapest prices found with in the last 7 days for return flights were $117 and $69 for one-way flights to San Juan Island for the period specified. Prices and availability are subject to change. Additional terms apply

OriginDestinationTravel DatesFlights From*
SEABellinghamAugust 19 to August 30$117
BOSSeattleSeptember 3 to September 13$217
BWISeattleJuly 11 to July 16$259
IADBellinghamSeptember 23 to September 30$298
BOSBellinghamSeptember 11 to September 15$371
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
DCASeattleJune 29 to July 3$391
SEABellinghamJune 27 to July 1$416
BOSSeattleJune 28 to June 30$469
BOSBellinghamJune 27 to July 29$780
*Prices include taxes and fees

San Juan Island SEA Flight Information

Traveling to
San Juan Island SEA
Lowest Price
$117
Number of Airlines Serving
4
Airlines Serving
United, Alaska Airlines
Number of Daily Flights
8
Airlines with Direct Flights
American Airlines, Alaska Airlines, Hawaiian Airlines, Air Tahiti Nui

Find The Perfect Hotel For After Your Flight

Amazing San Juan Island Accommodation Deals

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (980 reviews)
"Friendly and not expensive"

Reviewed on Jun 19, 2025

The Orca Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our Top San Juan Island with Airport Shuttles

Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (909 reviews)
Three nights gets in Friday Harbor.
"Great location in Friday Harbor. Easy walk to everything. Helpful and friendly staff. Nice pool, spa, sauna and small gym. Wife had an excellent massage through their day spa. Large room and good bed."

Reviewed on Jun 20, 2025

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Luxury Hotels in San Juan Island

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (980 reviews)
"Friendly and not expensive"

Reviewed on Jun 19, 2025

The Orca Inn
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

Friday Harbor
Stay at this cottage in Friday Harbor. Enjoy free WiFi, a garden, and laundry facilities. Popular attractions San Juan Golf & Tennis Club and San Juan Island ...
Wonderful country escape with great view and hosts
"The cottage was the perfect place for a wonderful get away on San Juan Island. Mary is a very creative artist and has decorated the cottage beautifully and provided absolutely everything we needed for our stay. The gardens are filled with fantastic flowers and the patio and view are a great place ..."

Reviewed on Oct 17, 2024

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (909 reviews)
Three nights gets in Friday Harbor.
"Great location in Friday Harbor. Easy walk to everything. Helpful and friendly staff. Nice pool, spa, sauna and small gym. Wife had an excellent massage through their day spa. Large room and good bed."

Reviewed on Jun 20, 2025

Earthbox Inn & Spa
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Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.6/10 Excellent! (340 reviews)
"Excellent and prompt communication from staff. Easy remote check-in. Very lovely space and comfortable accommodations."

Reviewed on Feb 23, 2025

Bird Rock Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in San Juan Island

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Friday Harbor
Book a stay at this beach vacation home in Friday Harbor. Enjoy a beach locale, a garden, and laundry facilities. Our guests praise the property condition in ...
9.8/10 Exceptional! (328 reviews)
Wonderful stay
"I came to the San Juan Islands for a wedding and decided to splurge on a place to stay that wasn’t your ordinary hotel. I did not realize it was as far out of town, however, it was perfect. The view, the house, the beds, the fire pit, long walks, truly it was fantastic. Thank you to our host!!"

Reviewed on Jun 16, 2025

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (909 reviews)
Three nights gets in Friday Harbor.
"Great location in Friday Harbor. Easy walk to everything. Helpful and friendly staff. Nice pool, spa, sauna and small gym. Wife had an excellent massage through their day spa. Large room and good bed."

Reviewed on Jun 20, 2025

Earthbox Inn & Spa
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.4/10 Very Good! (1,003 reviews)
"Friendly staff and clean well cared for facility. Convenient to the ferry and town facilities"

Reviewed on Jun 18, 2025

Friday Harbor Suites
Save an average of 15% on thousands of hotels when you're signed in
Friday Harbor Grand B&B

Friday Harbor Grand B&B

3 out of 5
345 Blair Ave, Friday Harbor, WA
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions San Juan Islands Museum of Art and San Juan ...
9.6/10 Exceptional! (130 reviews)
"Our host was amazing. The gluten free breakfast options were an added bonus."

Reviewed on Jun 10, 2025

Friday Harbor Grand B&B
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Best San Juan Island Flight and Hotel Packages

San Juan Island flight + hotel packages - economy flights

Price found within the past 48 hours. Click for updated prices.
Hilton Garden Inn Seattle Airport
Embassy Suites by Hilton Seattle North Lynnwood
Graduate by Hilton Seattle
Don't see what you're looking for?
See all available trips from Austin to San Juan Island
View all trips

San Juan Island flight + hotel packages - premium economy flights

Price found within the past 48 hours. Click for updated prices.
Embassy Suites by Hilton Seattle North Lynnwood
Lotte Hotel Seattle
1 Hotel Seattle
Don't see what you're looking for?
See all available trips from Atlanta to San Juan Island
View all trips

San Juan Island flight + hotel packages - first class flights

Price found within the past 48 hours. Click for updated prices.
Larkspur Landing Extended Stay Suites Renton
Lotte Hotel Seattle
The Alexis Royal Sonesta Hotel Seattle
Don't see what you're looking for?
See all available trips from Houston to San Juan Island
View all trips

Need a Car For After Your Flight?

Lowest prices found within the past 9 hours. Prices and availability subject to change. Additional terms may apply.

Plane Tickets To San Juan Island

Although you may try and resist the urge, you know that when the travel bug comes, there is only one way to get rid of it. Thankfully, Travelocity is here to help nip that travel bug in the bud with great deals on flights to San Juan Island. Browse through our inventory to explore a wide range of cheap flights to San Juan Island to solidify your next big trip out of town. Whether you are heading out on a business trip, exploring a place you have never been for pleasure or are bringing the family on the annual vacation, we have the perfect getaway waiting for you. In no time, you will be day dreaming of your plane landing in San Juan Island as you anxiously await to exit the plane and explore what San Juan Island has to offer. Considering all the amazing local food and culture in San Juan Island, we won't hold this against you.

When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Island to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Island without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Island with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Island today!

*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.