Cheap Flights to San Juan Island from $49

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How Much Does it Cost To Fly To San Juan Island?

The cheapest prices found with in the last 7 days for return flights were $97 and $49 for one-way flights to San Juan Island for the period specified. Prices and availability are subject to change. Additional terms apply

Sat, Oct 18 - Sat, Oct 25
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$97 Roundtrip, just found
$97
Roundtrip
just found
Select Alaska Airlines flight, departing Sat, Oct 18 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Sat, Oct 25, priced at $97 just found
OriginDestinationTravel DatesFlights From*
SEABellinghamOctober 11 to October 18$117
BWISeattleOctober 21 to October 26$191
BOSSeattleNovember 5 to November 5$192
BOSBellinghamOctober 18 to October 22$353
IADBellinghamAugust 23 to September 6$358
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
SEABellinghamAugust 10 to August 12$353
DCASeattleAugust 10 to August 21$461
BOSSeattleAugust 8 to August 12$513
BWIBellinghamAugust 8 to August 11$1,200
*Prices include taxes and fees

San Juan Island Flight Information

Traveling to
San Juan Island
Lowest Price
$97
Number of Airlines Serving
Airlines Serving
United, Alaska Airlines
Number of Daily Flights
Airlines with Direct Flights

Find The Perfect Hotel For After Your Flight

Amazing San Juan Island Accommodation Deals

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
$131 nightly
The price is $146 total per night from Aug 21 to Aug 22
$146 total
Aug 21 - Aug 22
Total includes taxes and fees
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.8/10 Good! (1,002 reviews)
"It is a nice quiet place to stay. The rooms are very small, but clean. The staff was friendly and helpful, and there was ample parking. It's just a five minute walk from downtown Friday Harbor."

Reviewed on Aug 2, 2025

The Orca Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our Top San Juan Island with Airport Shuttles

Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street, Friday Harbor, WA
$255 nightly
The price is $282 total per night from Sep 1 to Sep 2
$282 total
Sep 1 - Sep 2
Total includes taxes and fees
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (950 reviews)
"Earthbox was situated right downtown, no need to bring your car, easy to check in, buildings were clearly marked, room was clean and had plenty of coffee, and soaps. I will be back!"

Reviewed on Aug 4, 2025

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Luxury Hotels in San Juan Island

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
$131 nightly
The price is $146 total per night from Aug 21 to Aug 22
$146 total
Aug 21 - Aug 22
Total includes taxes and fees
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.8/10 Good! (1,002 reviews)
"It is a nice quiet place to stay. The rooms are very small, but clean. The staff was friendly and helpful, and there was ample parking. It's just a five minute walk from downtown Friday Harbor."

Reviewed on Aug 2, 2025

The Orca Inn
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

Friday Harbor
Stay at this cottage in Friday Harbor. Enjoy free WiFi, a garden, and laundry facilities. Popular attractions San Juan Golf & Tennis Club and San Juan Island ...
10/10 Exceptional! (161 reviews)
"We had a wonderful five-night stay at Fred and Mary’s charming garden cottage. The house was absolutely perfect—cozy, artistic, and full of character. Staying in Friday Harbor was a dream in itself, and this cottage truly made the experience even more special.The surrounding landscape was beautiful ..."

Reviewed on Aug 4, 2025

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WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street, Friday Harbor, WA
$255 nightly
The price is $282 total per night from Sep 1 to Sep 2
$282 total
Sep 1 - Sep 2
Total includes taxes and fees
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (950 reviews)
"Earthbox was situated right downtown, no need to bring your car, easy to check in, buildings were clearly marked, room was clean and had plenty of coffee, and soaps. I will be back!"

Reviewed on Aug 4, 2025

Earthbox Inn & Spa
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Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street, Friday Harbor, WA
$224 nightly
The price is $248 total per night from Sep 1 to Sep 2
$248 total
Sep 1 - Sep 2
Total includes taxes and fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.6/10 Excellent! (347 reviews)
Weekend getaway!
"Great location for walking around town. Loved Friday Harbor."

Reviewed on Jul 19, 2025

Bird Rock Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in San Juan Island

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Friday Harbor
Book a stay at this beach vacation home in Friday Harbor. Enjoy a beach locale, a garden, and laundry facilities. Our guests praise the property condition in ...
9.8/10 Exceptional! (329 reviews)
Wonderful stay
"I came to the San Juan Islands for a wedding and decided to splurge on a place to stay that wasn’t your ordinary hotel. I did not realize it was as far out of town, however, it was perfect. The view, the house, the beds, the fire pit, long walks, truly it was fantastic. Thank you to our host!!"

Reviewed on Jun 16, 2025

Get rates
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street, Friday Harbor, WA
$255 nightly
The price is $282 total per night from Sep 1 to Sep 2
$282 total
Sep 1 - Sep 2
Total includes taxes and fees
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (950 reviews)
"Earthbox was situated right downtown, no need to bring your car, easy to check in, buildings were clearly marked, room was clean and had plenty of coffee, and soaps. I will be back!"

Reviewed on Aug 4, 2025

Earthbox Inn & Spa
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street, Friday Harbor, WA
$233 nightly
The price is $258 total per night from Sep 1 to Sep 2
$258 total
Sep 1 - Sep 2
Total includes taxes and fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.4/10 Very Good! (1,004 reviews)
"We were really happy that the suite had separate rooms with very comfy queen beds. I like to watch TV but husband doesn't."

Reviewed on Jul 31, 2025

Friday Harbor Suites
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Friday Harbor Grand B&B

Friday Harbor Grand B&B

3 out of 5
345 Blair Ave, Friday Harbor, WA
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions San Juan Islands Museum of Art and San Juan ...
9.6/10 Exceptional! (133 reviews)
"Our host was awesome, the food was delicious and he made our stay so enjoyable. He gave great recommendations for food and sightseeing. Make sure you spend at least one evening in the parlor to enjoy his Piano music."

Reviewed on Jul 17, 2025

Get rates
Friday Harbor Grand B&B
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Best San Juan Island Flight and Hotel Packages

San Juan Island flight + hotel packages - economy flights

Price found within the past 48 hours. Click for updated prices.
Travelodge by Wyndham Seattle North of Downtown

Travelodge by Wyndham Seattle North of Downtown

2 out of 5
per person
Sep 12 - Sep 17
found 1 day ago
Roundtrip flight included
Denver (DEN) to Seattle (SEA)
The Inn at Virginia Mason

The Inn at Virginia Mason

2.5 out of 5
Save 100% on your flight
per person
Sep 9 - Sep 13
found 1 day ago
Roundtrip non-stop flight included
Dallas (DAL) to Seattle (SEA)
Lotte Hotel Seattle

Lotte Hotel Seattle

5 out of 5
Save 100% on your flight
per person
Sep 9 - Sep 13
found 1 day ago
Roundtrip non-stop flight included
Dallas (DAL) to Seattle (SEA)
Don't see what you're looking for?
See all available trips from Denver to San Juan Island
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Need a Car For After Your Flight?

Economy

  • 5 people
  • 300 free miles/total
Seatac, Washington, USA

$52

$105 total
found 1 day ago
Economy undefined

Special

  • 5 people
  • Unlimited mileage
Seattle, Washington, USA

$53

$163 total
found 1 day ago
Special undefined

Compact

  • 5 people
  • 300 free miles/total
Seatac, Washington, USA

$53

$106 total
found 1 day ago
Compact undefined

Midsize

  • 5 people
  • 300 free miles/total
Seatac, Washington, USA

$53

$106 total
found 1 day ago
Midsize undefined

Frequently asked questions

Can I fly to San Juan Island right now?
This depends on various factors, for example, where you're flying from and the COVID-19 restrictions in your destination. Before booking your flight to San Juan Island, be sure to check official government websites for the latest info. Travelocity's Covid-19 Travel Advisor also has useful details about travel during the COVID-19 pandemic, including restrictions, quarantine and social distancing rules for your destination and many others.
How much is the cheapest flight to San Juan Island?
Travelers snapped up a roundtrip flight to San Juan Island for as little as $97 within the last seven days. If you find a fare you like, lock it in fast. Cheap deals don't stick around for long! This price was available on Travelocity for flights to San Juan Island departing within the next year. Prices and availability are subject to change. Additional terms apply.
If I cannot travel due to COVID-19, can I change my booking to a later date?
Discover the answers you're after on our Customer Service Portal link. Rules regarding COVID-19 can vary between carriers, so have a look over the terms and conditions of your tickets to San Juan Island to learn more.
What is the cheapest month to fly to San Juan Island?
October is the cheapest time to jet to San Juan Island — that's based on Travelocity's direct return flight demand between January and December last year. We're here to help you score a fantastic deal so you can start planning your escape today.
How can I check my flight status to San Juan Island?
"Trips" has your back when it comes to details related to your flight to San Juan Island. The Travelocity customer portal allows you to manage everything from one place, from looking up your flight status to updating or canceling your booking. Click on Trips at the top right of the Travelocity homepage and then create a free account in seconds. Alternatively, download the Travelocity app and access your information while you're on the move. Whether you have the family flying with you or you're a lone adventurer, all your travel plans are in the palm of your hand.
How do I find the best deals on flights to San Juan Island?
Be flexible with your travel dates and you're likely to find a sensational deal. When searching for flights on Travelocity, click "Flexible dates" above your results to compare prices with surrounding days. Also try to book ahead of time and avoid peak periods. In the last seven days, the best price for a roundtrip flight to San Juan Island was $97. This price was available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
Why should I book my flight to San Juan Island with Travelocity?
Where to begin! With cheap flights to San Juan Island, accommodations and activities, you'll find all you need to wander wisely with Travelocity. Reserve your cheap family flights and take advantage of our 24/7 customer assistance and free cancellations on select airlines if necessary. Our goal is to offer hassle-free travel every time you book with us so that you can spend less time on the nitty-gritty and more time making memories with your travel buddies.
What are the most popular flight routes to San Juan Island?
Check out these top flight routes to San Juan Island and start organizing you next amazing adventure:

  • Los Angeles, CA (LAX-Los Angeles Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 5,286 flights a month.
  • Spokane, WA (GEG-Spokane Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 4,277 flights a month.
  • Anchorage, AK (ANC-Ted Stevens Anchorage Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 4,030 flights a month.

How much is a flight to San Juan Island on average?
In the last seven days, roundtrip flights to San Juan Island cost between $97 and $1,200. No matter your bank balance, we've got some great deals to help you keep within budget. These prices were available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
How long is the average flight to San Juan Island?
The duration of a direct flight to San Juan Island differs, but here you can check out the average travel times for a few top routes:

  • Los Angeles, CA (LAX-Los Angeles Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 2 hours and 53 minutes
  • Spokane, WA (GEG-Spokane Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 1 hour and 18 minutes
  • Anchorage, AK (ANC-Ted Stevens Anchorage Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 3 hours and 18 minutes

What can I expect on a flight to San Juan Island?
This depends on factors such as your airline and where you're flying from. Many airlines provide things like warm meals, drinks and entertainment on long-haul services. Whether you're seeking first class flights to San Juan Island or cheap flights for family vacations, you'll be looked after from the minute you take off to the moment you land.

Plane Tickets To San Juan Island

Although you may try and resist the urge, you know that when the travel bug comes, there is only one way to get rid of it. Thankfully, Travelocity is here to help nip that travel bug in the bud with great deals on flights to San Juan Island. Browse through our inventory to explore a wide range of cheap flights to San Juan Island to solidify your next big trip out of town. Whether you are heading out on a business trip, exploring a place you have never been for pleasure or are bringing the family on the annual vacation, we have the perfect getaway waiting for you. In no time, you will be day dreaming of your plane landing in San Juan Island as you anxiously await to exit the plane and explore what San Juan Island has to offer. Considering all the amazing local food and culture in San Juan Island, we won't hold this against you.

When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Island to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Island without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Island with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Island today!

*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.