Cheap Flights to San Juan Island from $107
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How Much Does it Cost To Fly To San Juan Island?
The cheapest prices found with in the last 7 days for return flights were $171 and $107 for one-way flights to San Juan Island for the period specified. Prices and availability are subject to change. Additional terms apply
BWI
Baltimore Washington Intl. Thurgood Marshall
SEA
Seattle - Tacoma Intl.
$207 Roundtrip, found 4 days ago
$207
Roundtrip
found 4 days ago
| Origin | Destination | Travel Dates | Flights From* |
|---|---|---|---|
| SEA | Bellingham | May 30 to June 6 | $171 |
| DCA | Seattle | July 27 to August 5 | $240 |
| BOS | Seattle | May 27 to May 28 | $294 |
| BWI | Bellingham | July 7 to July 13 | $429 |
| BOS | Bellingham | June 2 to June 9 | $447 |
| Origin | Destination | Travel Dates | Flights From* |
|---|---|---|---|
| SEA | Bellingham | May 16 to May 17 | $438 |
| BOS | Seattle | May 16 to May 24 | $502 |
| BWI | Bellingham | May 16 to May 24 | $576 |
| IAD | Seattle | May 17 to May 28 | $611 |
San Juan Island Flight Information
Traveling to | San Juan Island |
|---|---|
Lowest Price | $171 |
Number of Airlines Serving | |
Airlines Serving | Alaska Airlines, Southwest Airlines |
Number of Daily Flights | |
Airlines with Direct Flights |
Find The Perfect Hotel For After Your Flight
Our Top San Juan Island with Airport Shuttles
Earthbox Inn & Spa
410 Spring Street Friday Harbor WA
The price is $243 total per night from May 11 to May 12
$243 total
per night
May 11 - May 12
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,002 reviews)
Only a quick overnight, but they took dogs. Higher priced, and much nicer than what we needed, but would go back anytime. Spent a lot of time in Friday Harbor over decades, and never knew this place was there. Off season, so hard to guess what like in high season, but excellent experience.
Reviewed on May 4, 2026
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Luxury Hotels in San Juan Island
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Friday Harbor WA
Stay at this cottage in Friday Harbor. Enjoy free WiFi, a garden, and laundry facilities. Popular attractions False Bay and San Juan Golf & Tennis Club are located ...
10/10 Exceptional! (212 reviews)
The property exceeded my expectations. I came for peace and quiet and that’s exactly what I got. I also enjoyed visits with the hosts dogs and cats while I sat on the deck. It was the most perfect getaway and I can’t wait to go back someday!
Reviewed on May 6, 2026
Earthbox Inn & Spa
410 Spring Street Friday Harbor WA
$220 nightly
The price is $243 total per night from May 11 to May 12
$243 total
May 11 - May 12
Total with taxes and fees
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,002 reviews)
Only a quick overnight, but they took dogs. Higher priced, and much nicer than what we needed, but would go back anytime. Spent a lot of time in Friday Harbor over decades, and never knew this place was there. Off season, so hard to guess what like in high season, but excellent experience.
Reviewed on May 4, 2026
Bird Rock Hotel
35 First Street Friday Harbor WA
$155 nightly
The price is $172 total per night from May 13 to May 14
$172 total
May 13 - May 14
Total with taxes and fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Popular attractions Whale Museum and San Juan Islands Museum of Art are ...
8.8/10 Excellent! (367 reviews)
Unique hotel with some quirks. Great location, walkable to downtown and all the restaurants. Staff is friendly and responsive. Rooms are comfortable and clean. We stayed in a room that had a shared bathroom; and it seemed like quite a few of the rooms were sharing. One of the showers has not very ...
Reviewed on May 10, 2026
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Tucker House Inn
275 C Street Friday Harbor WA
$233 nightly
The price is $257 total per night from May 31 to Jun 1
$257 total
May 31 - Jun 1
Total with taxes and fees
Book a stay at this beach B&B in Friday Harbor. Enjoy free WiFi, free parking, and room service. Our guests praise the helpful staff in our reviews. Popular ...
9.4/10 Exceptional! (288 reviews)
The room was immaculate and perfect! My wife and I absolutely loved our experience and highly recommend. The staff were polite and professional.
Reviewed on May 9, 2026
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Family Friendly Hotels in San Juan Island
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Friday Harbor WA
Book a stay at this beach vacation home in Friday Harbor. Enjoy a beach locale, a garden, and laundry facilities. Our guests praise the property condition in ...
10/10 Exceptional! (364 reviews)
We loved staying here! Right next to westcott oysters, we were able launch paddle boards from the property, and the view during morning coffee can’t be beat. Highly recommend!
Reviewed on Apr 28, 2026
Earthbox Inn & Spa
410 Spring Street Friday Harbor WA
$220 nightly
The price is $243 total per night from May 11 to May 12
$243 total
May 11 - May 12
Total with taxes and fees
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,002 reviews)
Only a quick overnight, but they took dogs. Higher priced, and much nicer than what we needed, but would go back anytime. Spent a lot of time in Friday Harbor over decades, and never knew this place was there. Off season, so hard to guess what like in high season, but excellent experience.
Reviewed on May 4, 2026
Friday Harbor Suites
680 Spring Street Friday Harbor WA
$172 nightly
The price is $190 total per night from May 17 to May 18
$190 total
May 17 - May 18
Total with taxes and fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (1,005 reviews)
yes
Reviewed on May 3, 2026
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Friday Harbor Grand B&B
345 Blair Ave Friday Harbor WA
$244 nightly
The price is $270 total per night from May 11 to May 12
$270 total
May 11 - May 12
Total with taxes and fees
Stay at this B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions San Juan Islands Museum of Art and San Juan Historical ...
9.6/10 Exceptional! (139 reviews)
This place is class on every level…from the room cleanliness, to fresh baked cookies in the evening, to the delicious breakfast, to the informative host. But what sets it above all others is the evening’s piano event which should not be missed. We had a 3 night stay and we hope to return.
Reviewed on Apr 12, 2026
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Best San Juan Island Flight and Hotel Packages
San Juan Island flight + hotel packages - economy flights
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View all tripsNeed a Car For After Your Flight?
Compact
Seatac, Washington, USA
$18
$68 total
found 3 days ago
Special
Seatac, Washington, USA
$18
$66 total
found 3 days ago
Economy
Seatac, Washington, USA
$18
$67 total
found 3 days ago
Standard
Seattle, Washington, USA
$19
$76 total
found 3 days ago
Lowest prices found within the past 3 days. Prices and availability subject to change. Additional terms may apply.
Frequently asked questions
Plane Tickets To San Juan Island
Although you may try and resist the urge, you know that when the travel bug comes, there is only one way to get rid of it. Thankfully, Travelocity is here to help nip that travel bug in the bud with great deals on flights to San Juan Island. Browse through our inventory to explore a wide range of cheap flights to San Juan Island to solidify your next big trip out of town. Whether you are heading out on a business trip, exploring a place you have never been for pleasure or are bringing the family on the annual vacation, we have the perfect getaway waiting for you. In no time, you will be day dreaming of your plane landing in San Juan Island as you anxiously await to exit the plane and explore what San Juan Island has to offer. Considering all the amazing local food and culture in San Juan Island, we won't hold this against you.
When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Island to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Island without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Island with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Island today!
More Ways To Wander
San Juan Island Hotels
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San Juan Island Vacation Rentals
Great Deals on alternative accommodations
San Juan Island Car Rentals
Affordable cars to get you around town
San Juan Island Vacations
Save more by combining flights, hotels and cars
Things to do in San Juan Island
Activities, attractions and tours
Explore More Ways to Travel with Travelocity
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- Alaska Airlines Kalispell (FCA) to Friday Harbor (FRD) flights
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- Flights from Bozeman (BZN) to Friday Harbor (FRD)
- Flights from Casper (CPR) to Friday Harbor (FRD)
- Flights from Denver (DEN) to Friday Harbor (FRD)
- Flights from Wenatchee (EAT) to Friday Harbor (FRD)
- Flights from Panama City (ECP) to Friday Harbor (FRD)
- Flights from Fairbanks (FAI) to Friday Harbor (FRD)
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- Flights from Huntsville (HSV) to Friday Harbor (FRD)
- Flights from Los Angeles (LAX) to Friday Harbor (FRD)
- Flights from Lewiston (LWS) to Friday Harbor (FRD)
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- Flights from San Diego (SAN) to Friday Harbor (FRD)
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- Flights from Sacramento (SMF) to Friday Harbor (FRD)
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