Book Hotels in San Juan Island, WA

Cabins, apartments, houseboats! We offer comfortable & private vacation rentals

Save an extra 10% or more on select hotels with Member Discounts

Access exclusive hotel deals, only with the Travelocity app

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Neighborhood
Neighborhood
Traveler experience
Traveler experience
Popular locations
Popular locations
Meal plans available
Meal plans available
Property amenities
Property amenities
Accessibility
Accessibility

Top San Juan Island hotels

Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
$205 nightly
The price is $226 total per night from Apr 1 to Apr 2
$226 total
Apr 1 - Apr 2
Total with taxes and fees
A marina, a 24-hour gym, and a restaurant are all featured at this smoke-free hotel. Enjoy the gym and perks like free self parking and free WiFi. A coffee shop, ...
Easy parking close to property . Beautiful, clean and updated cabins right on the water .

Reviewed on Mar 31, 2026

Opens in a new windowSnug Harbor Resort
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
This bed & breakfast doesn't skimp on freebies - guests receive free breakfast, free WiFi, and free self parking. If you want to take your pet along, this pet-friendly ...
Wonderful, cozy cottage feel. Kind and attentive hosts. Delicious fresh local breakfast. James even made us a nice breakfast to go when we had to catch the early ferry on our last morning. Quiet forest setting and an easy drive to town. Highly recommended!

Reviewed on Mar 28, 2026

Opens in a new windowInn to the Woods B&B
Friday Harbor House

Friday Harbor House

3.5 out of 5
130 West Street Friday Harbor WA
$341 nightly
The price is $377 total per night from Apr 12 to Apr 13
$377 total
Apr 12 - Apr 13
Total with taxes and fees
A restaurant and a bar/lounge are featured at this hotel. Business travelers can take advantage of the free WiFi in public areas. Free self parking, a terrace, ...
We had a nice stay. The location is perfect. The staff is extremely friendly!

Reviewed on Mar 26, 2026

Opens in a new windowFriday Harbor House
Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Mooring Buoy

Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Mooring Buoy

Friday Harbor WA
A hot tub is featured at this vacation home, along with a garden and laundry facilities. Families will appreciate the playground and barbecue grills.
Cozy home, had everything we needed for a comfortable stay!

Reviewed on Mar 18, 2026

Opens in a new windowWaterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Mooring Buoy
Tucker House Inn

Tucker House Inn

4 out of 5
275 C Street Friday Harbor WA
$254 nightly
The price is $281 total per night from Apr 1 to Apr 2
$281 total
Apr 1 - Apr 2
Total with taxes and fees
This bed & breakfast doesn't skimp on freebies - guests receive free WiFi and free self parking. Traveling for business? Take advantage of the express check-in, ...
Yes the property welcomed our 18 lb. Havanese. However the Shaw Suite where we stayed was very disappointing. I would consider it very shabby…chipped paint on kitchen cabinets…old rickety dining chairs.. Ancient mattresses that were very saggy and uncomfortable…the bathroom is a horror…cracked and ...

Reviewed on Mar 10, 2026

Opens in a new windowTucker House Inn
Roche Harbor Resort

Roche Harbor Resort

3 out of 5
248 Reuben Memorial Dr Friday Harbor WA
$227 nightly
The price is $250 total per night from Apr 1 to Apr 2
$250 total
Apr 1 - Apr 2
Total with taxes and fees
A full-service spa, 3 restaurants, and an outdoor tennis court are all featured at this smoke-free resort. Enjoy the seasonal outdoor pool and perks like free ...
We had a wonderful stay the room was clean and inviting

Reviewed on Mar 30, 2026

Opens in a new windowRoche Harbor Resort
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
$220 nightly
The price is $243 total per night from Apr 1 to Apr 2
$243 total
Apr 1 - Apr 2
Total with taxes and fees
A full-service spa and an indoor pool are featured at this smoke-free hotel. Enjoy the gym and perks like free self parking and free WiFi. There's a hot tub ...
The contactless arrival was easy. Parking was limited. The property was quiet and super convenient for walking to the ferry and town. Water pressure was good and bed was comfy. Upon check out, staff were friendly. I’d stay here again!

Reviewed on Mar 29, 2026

Opens in a new windowEarthbox Inn & Spa
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street Friday Harbor WA
$155 nightly
The price is $172 total per night from Apr 1 to Apr 2
$172 total
Apr 1 - Apr 2
Total with taxes and fees
Free WiFi in public areas, a terrace, and a garden are available at this hotel. A picnic area, express check-in, and express check-out are also on offer.
Nice room. Nice location.

Reviewed on Feb 16, 2026

Opens in a new windowBird Rock Hotel
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
Fully refundableReserve now, pay when you stay
$168 nightly
The price is $186 total per night from Apr 5 to Apr 6
$186 total
Apr 5 - Apr 6
Total with taxes and fees
A hot tub, free self parking, and concierge services are featured at this hotel. Guests will appreciate perks like free WiFi and a free ferry terminal shuttle. ...
The staff at the lobby were extremely kind, helpful and provided tips on how to navigate the trail at the Lime Kilne state park. The rooms are super clean and fresh. I will come back to the same place again. The countless coffee choices and food choices at their cafe. I will be back here again.

Reviewed on Mar 30, 2026

Opens in a new windowFriday Harbor Suites
Don't see what you're looking for?
See all available properties in San Juan Island
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

San Juan Island Hotel & Travel Guide

Thinking about taking that trip to San Juan Islands? To experience it like the locals do, discover places to hang your hat that are near the hustle and bustle of San Juan Island. You will find 4 Travelocity-registered accommodation options located within 6-mile (10-kilometer) of the center of town.

Check out a choice of Travelocity places to stay located within a 6 miles (10 kilometers) distance, like the Earthbox Inn & Spa and Bird Rock Hotel.

The Amethyst Inn is 14 miles (23 kilometers) from the center of San Juan Island. Or, alternatively, the Prior Castle Inn is situated 14 miles (23 kilometers) away. More options worth looking into are the Fairholme Manor as well as the Comfy One Bedroom Suite in Oak Bay.

Friday Harbor Airport is the nearest preferred airport and is found 2 miles (3 kilometers) away from San Juan Island's downtown area. Conveniently located hotels include Earthbox Inn & Spa and Bird Rock Hotel.

Frequently asked questions

Where can I find cheap hotels in San Juan Island?
At Travelocity you'll find really nice hotels in San Juan Island at great prices. We source incredible prices with our trusted partners, so you have a tempting selection of cheap hotels to choose from. If you can be flexible on dates and location, consider staying at a hotel near San Juan Island rather than in San Juan Island. We may find you even better rates, too.
How do I find the best San Juan Island hotel deals?
Simple! On Travelocity, look through the fantastic offers we've already found in San Juan Island then use our filters to find a great deal that's perfect for you. Enter your travel dates, select the number of rooms you need, and we'll do the rest. You can get great discounts on flights and car hire, too, when you bundle.
How much does it cost to stay in a hotel in San Juan Island?
The cheapest hotel in San Juan Island is $172. This price was available within the past 7 days, for stays with a check-in date within the next year. Of course, the price you pay depends on your dates of travel, the length of your stay, and the hotel's location. Prices and availability are subject to change. Additional terms apply.
How many hotels are in San Juan Island?
There are 846 hotels in San Juan Island on Travelocity.
What are the best hotels in San Juan Island?
San Juan Island has so many great hotels to choose from at Travelocity — and it's so easy to find the perfect one. Just choose one of our popular pre-selected hotels with great reviews, or you can refine your search to build your ideal stay. Simply filter hotels based on price or star rating, or select properties with a pool, a hot tub, or a range of other amenities and pick the best place to stay in San Juan Island for you!
When is the best time to visit San Juan Island?
If you want the joy of a fun-filled trip in peak season, visit San Juan Island during March, April and May. If you'd prefer the peace of off-season, book a stay during quieter months, such as October, November and December.
When is the cheapest time to stay in San Juan Island?
Based on historic data is usually the cheapest month to visit San Juan Island. However, we have incredible deals all year round, so we're confident you'll find a room in your budget whenever you choose to travel.
Are there any great family-friendly hotels in San Juan Island?
There are multiple hotels in San Juan Island that will please the whole family. Do you need adjoining rooms, babysitting services or a swimming pool? We've got you covered. Use our family filter to narrow your search down and use guest reviews to help you pick the perfect place for your next family trip to San Juan Island. We have plenty of kid-friendly hotels in San Juan Island to choose from on Travelocity!
Why book a hotel in San Juan Island through Travelocity?
Because we have the top hotels in San Juan Island! We want to help you travel more and worry less. That's why we've put the most amazing hotel, car rental, and flight deals in one place. When you search for hotels with us, you know you're getting fantastic prices with no hidden fees and free cancellation on most properties up to 24 hours before your stay. If you become a Travelocity member, you also get exclusive member discounts. Sign up today!
How do I cancel my hotel booking in San Juan Island on Travelocity?
Canceling your booking with Travelocity is easy. Sign into your account and select My Trips. Here, you will see your cancellation options. We offer free cancellation on many properties.

Recent San Juan Island hotel reviews by fellow wanderers

Explore More Ways to Travel with Travelocity