Book Hotels in San Juan Island, WA

Cabins, apartments, houseboats! We offer comfortable & private vacation rentals

Save an extra 10% or more on select hotels with Member Discounts

Access exclusive hotel deals, only with the Travelocity app

Check prices for these dates

This weekend
Oct 2 - Oct 4
Next weekend
Oct 9 - Oct 11

Filter by

Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Neighborhood
Neighborhood
Traveler experience
Traveler experience
Popular locations
Popular locations
Meal plans available
Meal plans available
Property amenities
Property amenities
Accessibility
Accessibility

Top San Juan Island hotels

Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
This bed & breakfast doesn't skimp on freebies - guests receive free breakfast, free WiFi, and free self parking. If you want to take your pet along, this pet-friendly ...
"It's a very charming property. My bed was very comfortable, and I had a private hot tub on the patio with a view of Egg Lake! Breakfast was delicious and thoughtful. There are two adorable dogs on the property which made me very happy!"

Reviewed on Sep 24, 2026

Get rates
Opens in a new windowInn to the Woods B&B
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
$214 nightly
The price is $236 total per night from Oct 18 to Oct 19
$236 total
Oct 18 - Oct 19
Total with taxes and fees
A marina, a 24-hour gym, and a restaurant are all featured at this smoke-free hotel. Enjoy the gym and perks like free self parking and free WiFi. A coffee shop, ...
"This is a beautiful property, which makes it disappointing that the service left such a different impression. We arrived at 3:30 p.m., tired from a long day, and asked if we could check in before the posted 4:00 time. Nila at the front desk said the rooms had not been released by the cleaning crew. ..."

Reviewed on Sep 25, 2026

Opens in a new windowSnug Harbor Resort
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
Fully refundableReserve now, pay when you stay
$183 nightly
The price is $202 total per night from Oct 19 to Oct 20
$202 total
Oct 19 - Oct 20
Total with taxes and fees
A hot tub, free self parking, and concierge services are featured at this hotel. Guests will appreciate perks like free WiFi and a free ferry terminal shuttle. ...
"Paulina was absolutely wonderful in upgrading our suit. Every request was met with urgent response accompanied by graciousness and a smile."

Reviewed on Sep 29, 2026

Opens in a new windowFriday Harbor Suites
The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St Friday Harbor WA
Fully refundableReserve now, pay when you stay
$92 nightly
The price is $102 total per night from Oct 13 to Oct 14
$102 total
Oct 13 - Oct 14
Total with taxes and fees
This hotel doesn't skimp on freebies - guests receive free WiFi and free self parking. Luggage storage is also provided.
"The room at the orca was very small, we had to get in and of bed on the same side, the shower worked but was quite tight for my 6'3 inch bod. The lighting was odd, didnt work with the bed. Amenities consisted of some outside tables. We didn't come to Friday Harbor for the hotel so it was fine as ..."

Reviewed on Sep 29, 2026

Opens in a new windowThe Orca Inn
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
$230 nightly
The price is $255 total per night from Oct 1 to Oct 2
$255 total
Oct 1 - Oct 2
Total with taxes and fees
A full-service spa and an indoor pool are featured at this smoke-free hotel. Enjoy the gym and perks like free self parking and free WiFi. There's a hot tub ...
Opens in a new windowEarthbox Inn & Spa
Discovery Inn

Discovery Inn

2 out of 5
1016 Guard St. Friday Harbor WA
$155 nightly
The price is $171 total per night from Oct 15 to Oct 16
$171 total
Oct 15 - Oct 16
Total with taxes and fees
A hot tub is featured at this hotel, along with free self parking. WiFi in public areas is free. Luggage storage is also provided.
Opens in a new windowDiscovery Inn
Roche Harbor Resort

Roche Harbor Resort

3 out of 5
248 Reuben Memorial Dr Friday Harbor WA
$215 nightly
The price is $237 total per night from Oct 12 to Oct 13
$237 total
Oct 12 - Oct 13
Total with taxes and fees
A full-service spa, 3 restaurants, and an outdoor tennis court are all featured at this smoke-free resort. Enjoy the seasonal outdoor pool and perks like free ...
Opens in a new windowRoche Harbor Resort
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street Friday Harbor WA
$160 nightly
The price is $177 total per night from Oct 1 to Oct 2
$177 total
Oct 1 - Oct 2
Total with taxes and fees
Free WiFi in public areas, a terrace, and a garden are available at this hotel. A picnic area, express check-in, and express check-out are also on offer.
Opens in a new windowBird Rock Hotel
Friday Harbor House

Friday Harbor House

3.5 out of 5
130 West Street Friday Harbor WA
$404 nightly
The price is $447 total per night from Oct 14 to Oct 15
$447 total
Oct 14 - Oct 15
Total with taxes and fees
A restaurant and a bar/lounge are featured at this hotel. Business travelers can take advantage of the free WiFi in public areas. Free self parking, a terrace, ...
Opens in a new windowFriday Harbor House
Don't see what you're looking for?
See all available properties in San Juan Island
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

San Juan Island Hotel & Travel Guide

Thinking about taking that trip to San Juan Islands? To experience it like the locals do, discover places to hang your hat that are near the hustle and bustle of San Juan Island. You will find 4 Travelocity-registered accommodation options located within 6-mile (10-kilometer) of the center of town.

Check out a choice of Travelocity places to stay located within a 6 miles (10 kilometers) distance, like the Earthbox Inn & Spa and Bird Rock Hotel.

The Amethyst Inn is 14 miles (23 kilometers) from the center of San Juan Island. Or, alternatively, the Prior Castle Inn is situated 14 miles (23 kilometers) away. More options worth looking into are the Fairholme Manor as well as the Comfy One Bedroom Suite in Oak Bay.

Friday Harbor Airport is the nearest preferred airport and is found 2 miles (3 kilometers) away from San Juan Island's downtown area. Conveniently located hotels include Earthbox Inn & Spa and Bird Rock Hotel.

Frequently asked questions

Where can I find cheap hotels in San Juan Island?
At Travelocity you'll find really nice hotels in San Juan Island at great prices. We source incredible prices with our trusted partners, so you have a tempting selection of cheap hotels to choose from. If you can be flexible on dates and location, consider staying at a hotel near San Juan Island rather than in San Juan Island. We may find you even better rates, too.
How do I find the best San Juan Island hotel deals?
Simple! On Travelocity, look through the fantastic offers we've already found in San Juan Island then use our filters to find a great deal that's perfect for you. Enter your travel dates, select the number of rooms you need, and we'll do the rest. You can get great discounts on flights and car hire, too, when you bundle.
How much does it cost to stay in a hotel in San Juan Island?
The cheapest hotel in San Juan Island is $102. This price was available within the past 7 days, for stays with a check-in date within the next year. Of course, the price you pay depends on your dates of travel, the length of your stay, and the hotel's location. Prices and availability are subject to change. Additional terms apply.
How many hotels are in San Juan Island?
There are 865 hotels in San Juan Island on Travelocity.
What are the best hotels in San Juan Island?
San Juan Island has so many great hotels to choose from at Travelocity — and it's so easy to find the perfect one. Just choose one of our popular pre-selected hotels with great reviews, or you can refine your search to build your ideal stay. Simply filter hotels based on price or star rating, or select properties with a pool, a hot tub, or a range of other amenities and pick the best place to stay in San Juan Island for you!
When is the best time to visit San Juan Island?
If you want the joy of a fun-filled trip in peak season, visit San Juan Island during March, April and May. If you'd prefer the peace of off-season, book a stay during quieter months, such as October, November and December.
When is the cheapest time to stay in San Juan Island?
Based on historic data is usually the cheapest month to visit San Juan Island. However, we have incredible deals all year round, so we're confident you'll find a room in your budget whenever you choose to travel.
Are there any great family-friendly hotels in San Juan Island?
There are multiple hotels in San Juan Island that will please the whole family. Do you need adjoining rooms, babysitting services or a swimming pool? We've got you covered. Use our family filter to narrow your search down and use guest reviews to help you pick the perfect place for your next family trip to San Juan Island. We have plenty of kid-friendly hotels in San Juan Island to choose from on Travelocity!
Why book a hotel in San Juan Island through Travelocity?
Because we have the top hotels in San Juan Island! We want to help you travel more and worry less. That's why we've put the most amazing hotel, car rental, and flight deals in one place. When you search for hotels with us, you know you're getting fantastic prices with no hidden fees and free cancellation on most properties up to 24 hours before your stay. If you become a Travelocity member, you also get exclusive member discounts. Sign up today!
How do I cancel my hotel booking in San Juan Island on Travelocity?
Canceling your booking with Travelocity is easy. Sign into your account and select My Trips. Here, you will see your cancellation options. We offer free cancellation on many properties.

Recent San Juan Island hotel reviews by fellow wanderers

Friday Harbor Suites

Friday Harbor Suites

5 out of 5
Posted 1 hour ago
Travelocity Verified Review
"Paulina was absolutely wonderful in upgrading our suit. Every request was met with urgent response accompanied by graciousness and a smile."
A verified traveler stayed at Friday Harbor Suites
Friday Harbor Suites

Explore More Ways to Travel with Travelocity