Find and compare 3 Star hotels in San Juan Island

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Top San Juan Island 3 Star hotels

Anacortes Ship Harbor Inn

Anacortes Ship Harbor Inn

3 out of 5
5316 Ferry Terminal Road Anacortes WA
Fully refundableReserve now, pay when you stay
$169 nightly
The price is $187 total per night from Jun 28 to Jun 29
$187 total
Jun 28 - Jun 29
Total with taxes and fees
This hotel features a restaurant, a gym, and a bar/lounge. There's no skimping on freebies - guests receive free continental breakfast, free WiFi, and free self ...
9/10 Wonderful! (1,002 reviews)
"Excellent location. Nice view! Good value."

Reviewed on Jun 10, 2026

Opens in a new windowAnacortes Ship Harbor Inn
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
$210 nightly
The price is $232 total per night from Jun 22 to Jun 23
$232 total
Jun 22 - Jun 23
Total with taxes and fees
A full-service spa and an indoor pool are featured at this smoke-free hotel. Enjoy the gym and perks like free self parking and free WiFi. There's a hot tub ...
8.8/10 Excellent! (1,000 reviews)
"Clean room and grounds within walking distance to Ferry Landing. Staff was helpful and friendly and responsive. The room was will appointed including a small refrigerator, microwave and Keurig coffee maker."

Reviewed on Jun 5, 2026

Opens in a new windowEarthbox Inn & Spa
Lopez Islander Resort

Lopez Islander Resort

3.5 out of 5
2864 Fisherman Bay Rd Lopez Island WA
Fully refundableReserve now, pay when you stay
$179 nightly
The price is $198 total per night from Jun 14 to Jun 15
$198 total
Jun 14 - Jun 15
Total with taxes and fees
A marina and a restaurant are featured at this smoke-free hotel. Enjoy the seasonal outdoor pool and perks like free self parking and free WiFi. You'll appreciate ...
8.6/10 Excellent! (380 reviews)
"We've been coming here for 10 years and hope it never changes. Older resort but it's perfect IMO. Kids love playing in the large field and the restaurant has good food and excellent music. Can't wait to come back later this summer."

Reviewed on Jun 5, 2026

Opens in a new windowLopez Islander Resort
Outlook Inn

Outlook Inn

3 out of 5
171 Main St Eastsound WA
Fully refundableReserve now, pay when you stay
$392 nightly
The price is $433 total per night from Jun 15 to Jun 16
$433 total
Jun 15 - Jun 16
Total with taxes and fees
A restaurant and a bar/lounge are featured at this hotel. WiFi in public areas is free. A garden, a lobby fireplace, and a library are also on offer.
9.2/10 Wonderful! (515 reviews)
"Beautiful, clean room with great view of the sound and all East Sound restaurants, bars and Crescent each within walking distance."

Reviewed on May 19, 2026

Opens in a new windowOutlook Inn
Friday Harbor House

Friday Harbor House

3.5 out of 5
130 West Street Friday Harbor WA
$619 nightly
The price is $685 total per night from Jun 15 to Jun 16
$685 total
Jun 15 - Jun 16
Total with taxes and fees
A restaurant and a bar/lounge are featured at this hotel. Business travelers can take advantage of the free WiFi in public areas. Free self parking, a terrace, ...
9.6/10 Exceptional! (274 reviews)
"All was fabulous!"

Reviewed on Jun 9, 2026

Opens in a new windowFriday Harbor House
Deer Harbor Inn

Deer Harbor Inn

3 out of 5
33 Inn Lane Deer Harbor WA
$227 nightly
The price is $250 total per night from Jun 14 to Jun 15
$250 total
Jun 14 - Jun 15
Total with taxes and fees
A restaurant, free self parking, and a terrace are among this hotel's amenities. WiFi in public areas is free. A garden, a picnic area, and express check-out ...
8.4/10 Very Good! (207 reviews)
"Very quiet and uncrowded. Matthew's BBQ/SMOKE HOUSE restaurant and the music were great 👍"

Reviewed on May 31, 2026

Opens in a new windowDeer Harbor Inn
Landmark Inn on Orcas Island

Landmark Inn on Orcas Island

3 out of 5
67 Main St Eastsound WA
This hotel doesn't skimp on freebies - guests receive free WiFi and free self parking. A terrace, a garden, and express check-in are also on offer.
9.4/10 Exceptional! (198 reviews)
"Perfect location + ocean bay views + all of the necessities for cooking in + walking distance to town! What more could you ask for?"

Reviewed on Jun 3, 2026

Opens in a new windowLandmark Inn on Orcas Island
Nantucket Inn

Nantucket Inn

3.5 out of 5
3402 Commercial Ave Anacortes WA
$189 nightly
The price is $210 total per night from Jul 2 to Jul 3
$210 total
Jul 2 - Jul 3
Total with taxes and fees
This bed & breakfast features free WiFi in public areas, barbecue grills, and free self parking. Enjoy the free full breakfast each morning. A garden, a lobby ...
9.8/10 Exceptional! (553 reviews)
"Absolutely beautiful property. All staff were very friendly and the breakfast was great. Our room was spacious, with a seating area and tv and a comfy bed."

Reviewed on Jun 7, 2026

Opens in a new windowNantucket Inn
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
This bed & breakfast doesn't skimp on freebies - guests receive free breakfast, free WiFi, and free self parking. If you want to take your pet along, this pet-friendly ...
9.8/10 Exceptional! (99 reviews)
"The room was not a place you would want to "hang out in" because it was small and only had the bed for sitting and the bed was uncomfortable. The room had no view and was right near the busy road on the island that was very loud. The nature trail was really a small loop around the property. Breakfast ..."

Reviewed on Jun 11, 2026

Opens in a new windowInn to the Woods B&B
Kangaroo House B&B on Orcas Island

Kangaroo House B&B on Orcas Island

3.5 out of 5
1459 North Beach Road Eastsound WA
$272 nightly
The price is $300 total per night from Jun 16 to Jun 17
$300 total
Jun 16 - Jun 17
Total with taxes and fees
This bed & breakfast doesn't skimp on freebies - guests receive free WiFi and free self parking. A terrace, a garden, and a library are also on offer.
10/10 Exceptional! (172 reviews)
"Jill and Charles were the BEST hosts!! The breakfast was fabulous! the property is beautiful and so quiet! Rooms are cozy and comfy!! They were so helpful and were so kind to us as we had to check out early and had our breakfast ready! Great place and we will be back...!!!"

Reviewed on May 27, 2026

Opens in a new windowKangaroo House B&B on Orcas Island
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3 Star Hotels San Juan Island

Maybe you’ve got to travel for work, or perhaps you’re finally ready to book that much-deserved vacation—regardless, it’s time for you to get on a plane and you’re going to make the most of it. You’ve traveled enough to know how important a comfy bed and room service can be, so booking a hotel with all the amenities you need is a priority.

You can find 3 star hotels in San Juan Island that keep you close to all the great sightseeing and activities around the area, or even book a place that’s a bit more secluded, if that’s what you prefer. No matter what you’re looking for—whether you’re all about the location or are invested in on-site perks--Travelocity will help you find the accommodation that works best for you.

When it comes to options, you’ll have them. The San Juan Island 3 star hotels give you plenty of choices as far as access to the best areas, and many also offer a breakfast buffet, as well as plenty of other amenities like high-speed Wi-Fi and an on-site pool or spa.

Whatever you’re looking for on your next getaway, browse Travelocity’s big selection of hotels to ensure you get the best possible deal. Book one of the best 3 star hotels in San Juan Island today!

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