Cheap Flights to San Juan Islands from $79
Wander Wisely with exceptional service, 24/7 supportOpens in a new window
Feel at ease with free flight cancellations within 24 hours of booking
Change your flight without a fee on select flights
How Much Does it Cost To Fly To San Juan Islands?
The cheapest prices found with in the last 7 days for return flights were $184 and $79 for one-way flights to San Juan Islands for the period specified. Prices and availability are subject to change. Additional terms apply
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$184 Roundtrip, found 1 day ago
$184
Roundtrip
found 1 day ago
| Origin | Destination | Travel Dates | Flights From* |
|---|---|---|---|
| SEA | Bellingham | August 29 to September 5 | $187 |
| BOS | Seattle | September 1 to September 9 | $222 |
| IAD | Seattle | August 14 to August 21 | $246 |
| BWI | Bellingham | August 11 to August 31 | $424 |
| BOS | Bellingham | August 18 to August 25 | $465 |
| Origin | Destination | Travel Dates | Flights From* |
|---|---|---|---|
| BOS | Everett | June 13 to June 27 | $497 |
| DCA | Seattle | June 13 to June 19 | $626 |
| BOS | Bellingham | June 14 to June 15 | $735 |
| IAD | Bellingham | June 13 to June 15 | $797 |
San Juan Islands Flight Information
Traveling to | San Juan Islands |
|---|---|
Lowest Price | $184 |
Number of Airlines Serving | |
Airlines Serving | Alaska Airlines |
Number of Daily Flights | |
Airlines with Direct Flights |
Find The Perfect Hotel For After Your Flight
Our Top San Juan Islands with Airport Shuttles
Earthbox Inn & Spa
410 Spring Street Friday Harbor WA
$210 nightly
The price is $232 total per night from Jun 22 to Jun 23
$232 total
Jun 22 - Jun 23
Total with taxes and fees
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,000 reviews)
"Clean room and grounds within walking distance to Ferry Landing. Staff was helpful and friendly and responsive. The room was will appointed including a small refrigerator, microwave and Keurig coffee maker."
Reviewed on Jun 5, 2026
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Luxury Hotels in San Juan Islands
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Friday Harbor WA
Stay at this cottage in Friday Harbor. Enjoy free WiFi, a garden, and laundry facilities. Popular attractions False Bay and San Juan Golf & Tennis Club are located ...
10/10 Exceptional! (215 reviews)
"The guest cottage is one of the most beautiful and comfortable places we've ever stayed. The setting on San Juan Island, out in the quiet countryside, and the view from the cottage itself, is absolutely spectacular. Mary and Fred were great hosts: friendly, available, unobtrusive. The cottage is ..."
Reviewed on Jun 10, 2026
Earthbox Inn & Spa
410 Spring Street Friday Harbor WA
$210 nightly
The price is $232 total per night from Jun 22 to Jun 23
$232 total
Jun 22 - Jun 23
Total with taxes and fees
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,000 reviews)
"Clean room and grounds within walking distance to Ferry Landing. Staff was helpful and friendly and responsive. The room was will appointed including a small refrigerator, microwave and Keurig coffee maker."
Reviewed on Jun 5, 2026
Bird Rock Hotel
35 First Street Friday Harbor WA
$110 nightly
The price is $122 total per night from Jun 18 to Jun 19
$122 total
Jun 18 - Jun 19
Total with taxes and fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Popular attractions Whale Museum and San Juan Islands Museum of Art are ...
8.8/10 Excellent! (371 reviews)
"Great spot. Very enjoyable. Comfy bed. Shower head could have been higher but overall a great spot."
Reviewed on Jun 9, 2026
Save an average of 15% on thousands of hotels when you're signed in
Deer Harbor Inn
33 Inn Lane Deer Harbor WA
$227 nightly
The price is $250 total per night from Jun 14 to Jun 15
$250 total
Jun 14 - Jun 15
Total with taxes and fees
Stay at this hotel in Deer Harbor. Enjoy free WiFi, free parking, and a garden. Popular attractions Skull Island State Park and West Sound Marina are located ...
8.4/10 Very Good! (207 reviews)
"Very quiet and uncrowded. Matthew's BBQ/SMOKE HOUSE restaurant and the music were great 👍"
Reviewed on May 31, 2026
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Family Friendly Hotels in San Juan Islands
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Friday Harbor WA
Book a stay at this beach vacation home in Friday Harbor. Enjoy a beach locale, a garden, and laundry facilities. Our guests praise the property condition in ...
10/10 Exceptional! (369 reviews)
"Sixth time here and it never gets old! Our family LOVES this place. Comfy beds, beautiful view, great accommodations and the oyster farm next door for an afternoon meal is to die for! We look forward to our next trip here"
Reviewed on Jun 7, 2026
Waterfront Village Beach House
Lopez Island WA
Book a stay at this beach vacation home in Lopez Island. Enjoy a beach locale, a garden, and laundry facilities. Popular attractions Lopez Island Vineyards and ...
10/10 Exceptional! (154 reviews)
"The view was spectacular. The house is exceptionally comfortable with a bathroom for each bedroom. The house is spacious, tastefully decorated and has everything you could need during your stay. The location is very convenient, you can walk to everything in the village."
Reviewed on Jun 5, 2026
Earthbox Inn & Spa
410 Spring Street Friday Harbor WA
$210 nightly
The price is $232 total per night from Jun 22 to Jun 23
$232 total
Jun 22 - Jun 23
Total with taxes and fees
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.8/10 Excellent! (1,000 reviews)
"Clean room and grounds within walking distance to Ferry Landing. Staff was helpful and friendly and responsive. The room was will appointed including a small refrigerator, microwave and Keurig coffee maker."
Reviewed on Jun 5, 2026
Save an average of 15% on thousands of hotels when you're signed in
Private & Beautiful Custom Orcas Island Vacation Home Eastsound
Eastsound WA
Stay at this vacation home in Eastsound. Enjoy laundry facilities, patios, and in-room jetted tubs. Popular attractions Labyrinth and Darvill's Bookstore are ...
9.6/10 Exceptional! (118 reviews)
"The house was absolutely beautiful and was the perfect place for our stay on the island. The hosts were very kind and responsive. If we ever find ourselves on the island again we will look into staying here again!"
Reviewed on May 17, 2026
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Best San Juan Islands Flight and Hotel Packages
San Juan Islands flight + hotel packages - economy flights
Price found within the past 48 hours. Click for updated prices.
Don't see what you're looking for?
See all available trips from Mesa to San Juan Islands
View all tripsSan Juan Islands flight + hotel packages - premium economy flights
Price found within the past 48 hours. Click for updated prices.
Don't see what you're looking for?
See all available trips from Los Angeles to San Juan Islands
View all tripsSan Juan Islands flight + hotel packages - first class flights
Price found within the past 48 hours. Click for updated prices.
Don't see what you're looking for?
See all available trips from Dallas to San Juan Islands
View all tripsNeed a Car For After Your Flight?
Economy
Seatac, Washington, USA
$31
$61 total
found 3 days ago
Compact
Seatac, Washington, USA
$31
$62 total
found 3 days ago
Midsize
Seatac, Washington, USA
$31
$63 total
found 3 days ago
Fullsize
Seatac, Washington, USA
$38
$76 total
found 3 days ago
Lowest prices found within the past 3 days. Prices and availability subject to change. Additional terms may apply.
Frequently asked questions
Plane Tickets To San Juan Islands
Although you may try and resist the urge, you know that when the travel bug comes, there is only one way to get rid of it. Thankfully, Travelocity is here to help nip that travel bug in the bud with great deals on flights to San Juan Islands. Browse through our inventory to explore a wide range of cheap flights to San Juan Islands to solidify your next big trip out of town. Whether you are heading out on a business trip, exploring a place you have never been for pleasure or are bringing the family on the annual vacation, we have the perfect getaway waiting for you. In no time, you will be day dreaming of your plane landing in San Juan Islands as you anxiously await to exit the plane and explore what San Juan Islands has to offer. Considering all the amazing local food and culture in San Juan Islands, we won't hold this against you.
When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Islands to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Islands without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Islands with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Islands today!
More Ways To Wander
San Juan Islands Hotels
Find the perfect hotel after your flight
San Juan Islands Vacation Rentals
Great Deals on alternative accommodations
San Juan Islands Car Rentals
Affordable cars to get you around town
San Juan Islands Vacations
Save more by combining flights, hotels and cars
Things to do in San Juan Islands
Activities, attractions and tours
Explore More Ways to Travel with Travelocity
- 4 Star Hotels in Shaw Island
- Farmstay in Shaw Island
- B&B in Shaw Island
- Independent Hotels in Shaw Island
- Houseboats in Shaw Island
- Hotels near Spencer Spit State Park
- Hotels near Odlin County Park
- Farmstay in Orcas Island
- Apartments in Orcas Island
- Cabins in Orcas Island
- Chalets in Orcas Island
- Condos in Orcas Island
- Beach Resorts & in Orcas Island
- Cheap Hotels in Orcas Island
- Kid Friendly Hotels in Orcas Island
- Hotels with Pools in Orcas Island
- Hotels with Hot Tubs in Orcas Island
- Pet Friendly Hotels in Orcas Island
- Spa Resorts & in Orcas Island
- Orcas Island Hotels
- Inns in Orcas Island
- Vacation Homes in Orcas Island
- Resorts in Orcas Island
- Farmstay in Lopez Island
- B&B in Lopez Island
- Cabins in Lopez Island
- Chalets in Lopez Island
- Cottages in Lopez Island
- Beach Resorts & in Lopez Island
- Kid Friendly Hotels in Lopez Island
- Romantic Getaways & Hotels in Lopez Island
- Hotel Wedding Venues Hotels in Lopez Island
- Lopez Island Hotels
- Vacation Homes in Lopez Island
- Rv Parks in Lopez Island
- Resorts in Lopez Island
- Farmstay in Orcas
- Hostels in Orcas
- Orcas Hotels
- Hotels near Lopez Island Vineyards and Winery
- Flights to Shaw Island
- Flights to Blaine
- Flights to Birch Bay
- Flights to Deer Harbor
- Flights to Bow
- Flights to Burlington
- Flights to Lynden
- Flights to Point Roberts
- Flights to Orcas Island
- Flights from Baltimore to Orcas Island
- Flights from Cleveland to Orcas Island
- Flights from Columbus to Orcas Island
- Flights from Copenhagen to Orcas Island
- Flights from Dallas to Orcas Island
- Flights from Detroit to Orcas Island
- Flights from Indianapolis to Orcas Island
- Flights from Las Vegas to Orcas Island
- Flights from Nashville to Orcas Island
- Flights from Orlando to Orcas Island
- Flights from Phoenix to Orcas Island
- Flights from Portland to Orcas Island
- Flights from Toronto to Orcas Island
- Flights from Vancouver to Orcas Island
- Flights from Sacramento to Orcas Island
- Flights from Newark to Orcas Island
- Flights from Tucson to Orcas Island
- Flights from Fresno to Orcas Island
- Flights to Port Townsend
- Flights to Stanwood
- Flights to Oak Harbor
- Flights to Sequim
- Flights to Decatur Island
- Flights to Mount Vernon
- Flights to San Juan Island
- Flights to Lopez Island
- Flights from Oklahoma City to Lopez Island
- Flights from Campbell River to Lopez Island
- Flights to Eastsound
- Flights to Waldron Island
- Flights to Coupeville
- Flights to Lummi Island
- Flights to Bellingham
- Flights to Anacortes
- Flights to Samish Island
- Flights to Ferndale
- Flights to La Conner
- Flights to Camano Island
- Flights to Friday Harbor
- Flights to Roche Harbor
- Flights to Sedro-Woolley