Cheap Flights to San Juan Islands from $49

Wander Wisely with exceptional service, 24/7 supportOpens in a new window

Feel at ease with free flight cancellations within 24 hours of booking

Change your flight without a fee on select flights

How Much Does it Cost To Fly To San Juan Islands?

The cheapest prices found with in the last 7 days for return flights were $90 and $49 for one-way flights to San Juan Islands for the period specified. Prices and availability are subject to change. Additional terms apply

Sat, Oct 18 - Sat, Oct 25
LAX
Los Angeles Intl.
SEA
Seattle - Tacoma Intl.
$98 Roundtrip, found 3 hours ago
$98
Roundtrip
found 3 hours ago
Select Frontier Airlines flight, departing Sat, Oct 18 from Los Angeles Intl. to Seattle - Tacoma Intl., returning Sat, Oct 25, priced at $98 found 3 hours ago
Tue, Nov 4 - Wed, Nov 12
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$121 Roundtrip, found 16 hours ago
$121
Roundtrip
found 16 hours ago
Select Alaska Airlines flight, departing Tue, Nov 4 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Wed, Nov 12, priced at $121 found 16 hours ago
OriginDestinationTravel DatesFlights From*
LASSeattleOctober 23 to October 26$90
LASBellinghamOctober 17 to October 19$264
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
LASEverettAugust 22 to August 24$236
LASBellinghamAugust 22 to August 25$634
*Prices include taxes and fees

San Juan Islands SEA Flight Information

Traveling to
San Juan Islands SEA
Lowest Price
$90
Number of Airlines Serving
4
Airlines Serving
Frontier Airlines, Alaska Airlines
Number of Daily Flights
8
Airlines with Direct Flights
American Airlines, Alaska Airlines, Hawaiian Airlines, Air Tahiti Nui

Find The Perfect Hotel For After Your Flight

Amazing San Juan Islands Accommodation Deals

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
$141 nightly
The price is $157 total per night from Sep 17 to Sep 18
$157 total
Sep 17 - Sep 18
Total includes taxes and fees
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.8/10 Good! (1,000 reviews)
"I liked that it was affordable and close to a variety of food options, shopping, and excursions."

Reviewed on Aug 12, 2025

The Orca Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our Top San Juan Islands with Airport Shuttles

Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street, Friday Harbor, WA
$255 nightly
The price is $282 total per night from Sep 1 to Sep 2
$282 total
Sep 1 - Sep 2
Total includes taxes and fees
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (961 reviews)
"We stayed at the EarthBox Inn for three nights while we biked the San Juans! Lovely spot to come back to each night! Beds and pillows were great and shower was nice. The location is excellent! We never moved our car once we parked it because everything is within walking distance. Had some lovely ..."

Reviewed on Aug 17, 2025

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Luxury Hotels in San Juan Islands

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
$141 nightly
The price is $157 total per night from Sep 17 to Sep 18
$157 total
Sep 17 - Sep 18
Total includes taxes and fees
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.8/10 Good! (1,000 reviews)
"I liked that it was affordable and close to a variety of food options, shopping, and excursions."

Reviewed on Aug 12, 2025

The Orca Inn
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

Friday Harbor
Stay at this cottage in Friday Harbor. Enjoy free WiFi, a garden, and laundry facilities. Popular attractions San Juan Golf & Tennis Club and San Juan Island ...
10/10 Exceptional! (163 reviews)
"This cottage is amazing. All aspects of check in were carefully thought out and easy to follow. The kitchen facilities are beautiful, very thoughtfully planned, and clean."

Reviewed on Aug 16, 2025

Get rates
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street, Friday Harbor, WA
$255 nightly
The price is $282 total per night from Sep 1 to Sep 2
$282 total
Sep 1 - Sep 2
Total includes taxes and fees
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (961 reviews)
"We stayed at the EarthBox Inn for three nights while we biked the San Juans! Lovely spot to come back to each night! Beds and pillows were great and shower was nice. The location is excellent! We never moved our car once we parked it because everything is within walking distance. Had some lovely ..."

Reviewed on Aug 17, 2025

Earthbox Inn & Spa
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street, Friday Harbor, WA
$224 nightly
The price is $248 total per night from Sep 1 to Sep 2
$248 total
Sep 1 - Sep 2
Total includes taxes and fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.6/10 Excellent! (351 reviews)
Weekend getaway!
"Great location for walking around town. Loved Friday Harbor."

Reviewed on Jul 19, 2025

Bird Rock Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in San Juan Islands

Historic lodge, new wing, ocean-front, private beach, kayaks, hot tub, and more!
Great for families

Historic lodge, new wing, ocean-front, private beach, kayaks, hot tub, and more!

Eastsound
Book a stay at this beach vacation home in Eastsound. Enjoy a beach locale, a garden, and laundry facilities. Popular attractions Crescent Beach and The Funhouse ...
9.8/10 Exceptional! (51 reviews)

Families like: Kitchen, on the beach, close to beach, games and toys

Beautiful house, beautiful scenery
"This is one of those places where the house was so nice that we didn’t feel the need to do other stuff…! Most of the time we just enjoyed relaxing while looking out at the water. We even spotted a lip,e of orcas, which we understand is not that common!"

Reviewed on Jun 30, 2025

Get rates
Historic lodge, new wing, ocean-front, private beach, kayaks, hot tub, and more!
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Friday Harbor
Book a stay at this beach vacation home in Friday Harbor. Enjoy a beach locale, a garden, and laundry facilities. Our guests praise the property condition in ...
9.8/10 Exceptional! (330 reviews)
Amazing
"This is our second time staying at this property and we have booked for next year. We bring our kayaks and it's just perfect. The best vacation ever."

Reviewed on Aug 9, 2025

Get rates
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Waterfront Village Beach House

Waterfront Village Beach House

Lopez Island
Book a stay at this beach vacation home in Lopez Island. Enjoy a beach locale, a garden, and laundry facilities. Popular attractions Lopez Island Vineyards and ...
10/10 Exceptional! (137 reviews)
Lopez waterfront home
"Everything about the house and our stay was perfect. We stayed with family from England and we all said it was a wonderful experience on Lopez Island, including the weather!"

Reviewed on May 11, 2025

Get rates
Waterfront Village Beach House
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street, Friday Harbor, WA
$255 nightly
The price is $282 total per night from Sep 1 to Sep 2
$282 total
Sep 1 - Sep 2
Total includes taxes and fees
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (961 reviews)
"We stayed at the EarthBox Inn for three nights while we biked the San Juans! Lovely spot to come back to each night! Beds and pillows were great and shower was nice. The location is excellent! We never moved our car once we parked it because everything is within walking distance. Had some lovely ..."

Reviewed on Aug 17, 2025

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Best San Juan Islands Flight and Hotel Packages

San Juan Islands flight + hotel packages - economy flights

Price found within the past 48 hours. Click for updated prices.
WorldMark Seattle - The Camlin

WorldMark Seattle - The Camlin

2.5 out of 5
per person
Oct 7 - Oct 9
found 22 hours ago
Roundtrip flight included
Sacramento (SMF) to Seattle (SEA)
Seattle Vacation Home - Fremont House

Seattle Vacation Home - Fremont House

3.5 out of 5
Save 100% on your flight
per person
Oct 8 - Oct 14
just found
Roundtrip flight included
Los Angeles (LAX) to Seattle (SEA)
Seattle Vacation Home - The Port

Seattle Vacation Home - The Port

3.5 out of 5
Save 100% on your flight
per person
Oct 8 - Oct 14
just found
Roundtrip flight included
Los Angeles (LAX) to Seattle (SEA)
Don't see what you're looking for?
See all available trips from Sacramento to San Juan Islands
View all trips

San Juan Islands flight + hotel packages - premium economy flights

Price found within the past 48 hours. Click for updated prices.
The Belltown Inn

The Belltown Inn

2.5 out of 5
per person
Sep 26 - Sep 28
found 1 day ago
Roundtrip flight included
Los Angeles (LAX) to Seattle (SEA)
Hilton Seattle Airport & Conference Center

Hilton Seattle Airport & Conference Center

4 out of 5
per person
Sep 26 - Sep 30
found 5 hours ago
Roundtrip flight included
Los Angeles (LAX) to Seattle (SEA)
1 Hotel Seattle

1 Hotel Seattle

5 out of 5
per person
Sep 26 - Sep 28
found 1 day ago
Roundtrip flight included
Los Angeles (LAX) to Seattle (SEA)
Don't see what you're looking for?
See all available trips from Los Angeles to San Juan Islands
View all trips

San Juan Islands flight + hotel packages - first class flights

Price found within the past 48 hours. Click for updated prices.
Coast Seattle Downtown Hotel by APA

Coast Seattle Downtown Hotel by APA

4 out of 5
per person
Oct 4 - Oct 6
found 22 hours ago
Roundtrip flight included
Los Angeles (LAX) to Seattle (SEA)
1 Hotel Seattle

1 Hotel Seattle

5 out of 5
per person
Oct 4 - Oct 6
found 22 hours ago
Roundtrip flight included
Los Angeles (LAX) to Seattle (SEA)
The Dylan, a Baymont by Wyndham

The Dylan, a Baymont by Wyndham

2.5 out of 5
per person
Oct 8 - Oct 14
found 1 day ago
Roundtrip flight included
Chicago (ORD) to Seattle (SEA)
Don't see what you're looking for?
See all available trips from Los Angeles to San Juan Islands
View all trips

Need a Car For After Your Flight?

Special

  • 4 people
  • Unlimited mileage
Seatac, Washington, USA

$27

$89 total
found 9 hours ago
Special undefined

Economy

  • 4 people
  • Unlimited mileage
Seatac, Washington, USA

$31

$99 total
found 9 hours ago
Economy undefined

Compact

  • 5 people
  • Unlimited mileage
Seatac, Washington, USA

$31

$99 total
found 9 hours ago
Compact undefined

Fullsize

  • 5 people
  • Unlimited mileage
Seatac, Washington, USA

$33

$103 total
found 9 hours ago
Fullsize undefined
Lowest prices found within the past 9 hours. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

How much is the cheapest flight to San Juan Islands?
A roundtrip flight to San Juan Islands cost as little as $90 in the last seven days. Once you've chosen your travel dates, we'll help you pick up an amazing deal. This price was available on Travelocity for flights to San Juan Islands departing within the next year. Prices and availability are subject to change. Additional terms apply.
What is the cheapest month to fly to San Juan Islands?
For your best chance at nabbing a good flight deal, time your escape sometime during October. Based on Travelocity's direct flight demand from January to December last year, it's the most affordable period to travel to San Juan Islands.
How can I check my flight status to San Juan Islands?
There are a couple of useful ways to look up the status of your flight. You'll discover all the necessary info in our Trips portal, which is located at the top right of our homepage. Sign in or open an account in seconds — you'll then be able to browse and manage your bookings whenever you need. If you're already traveling, the Travelocity app can also help you check the status of your flight to San Juan Islands, as well as share details with any members of your family flying with you.
How do I find the best deals on flights to San Juan Islands?
An easy way to score a terrific deal is to be flexible with your travel dates. Start by searching for your flight to San Juan Islands, then hit "Flexible dates" at the top of the page. This will reveal any cheaper prices for the surrounding dates. Like more advice? Book in advance. To give you an idea of fares, $90 was the best price for a return flight to San Juan Islands in the last seven days on our site. This price was available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
Why should I book my flight to San Juan Islands with Travelocity?
Seek out cheap flights to San Juan Islands with Travelocity and begin organizing your next escape. With 24/7 customer support along every step of your trip and a Price Match Guarantee, we take the difficulty out of reserving cheap family flights, accommodations and more. Snap up a great deal now and get ready for the adventure of a lifetime.
What are the most popular flight routes to San Juan Islands?
Check out these main flight routes to San Juan Islands and start planning your next adventure:

  • Los Angeles, CA (LAX-Los Angeles Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 5,286 flights a month.
  • Spokane, WA (GEG-Spokane Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 4,277 flights a month.
  • Anchorage, AK (ANC-Ted Stevens Anchorage Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 4,030 flights a month.

How much is a flight to San Juan Islands on average?
Passengers have snapped up roundtrip flights to San Juan Islands for between $90 and $634 with Travelocity in the last seven days. Whether you want to fly budget or business class, we'll help you find the best deal. These prices were available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
How long is the average flight to San Juan Islands?
The duration of a direct flight to San Juan Islands of course differs, but here are the average travel times for a number of favorite routes:

  • Los Angeles, CA (LAX-Los Angeles Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 2 hours and 53 minutes
  • Spokane, WA (GEG-Spokane Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 1 hour and 18 minutes
  • Anchorage, AK (ANC-Ted Stevens Anchorage Intl.) to Seattle - Tacoma Intl. Airport (SEA) - 3 hours and 18 minutes

What can I expect on a flight to San Juan Islands?
This depends mostly on your carrier and the length of your trip. Many airlines offer food, drinks and entertainment on long-haul services. Whether you're chasing business class flights to San Juan Islands or cheap flights for family vacations, you'll be well taken care of from the moment your plane takes off to touchdown.

Plane Tickets To San Juan Islands

Although you may try and resist the urge, you know that when the travel bug comes, there is only one way to get rid of it. Thankfully, Travelocity is here to help nip that travel bug in the bud with great deals on flights to San Juan Islands. Browse through our inventory to explore a wide range of cheap flights to San Juan Islands to solidify your next big trip out of town. Whether you are heading out on a business trip, exploring a place you have never been for pleasure or are bringing the family on the annual vacation, we have the perfect getaway waiting for you. In no time, you will be day dreaming of your plane landing in San Juan Islands as you anxiously await to exit the plane and explore what San Juan Islands has to offer. Considering all the amazing local food and culture in San Juan Islands, we won't hold this against you.

When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Islands to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Islands without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Islands with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Islands today!

*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.