Find and compare 3 Star hotels in San Juan Island

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Top San Juan Island 3 Star hotels

Anacortes Ship Harbor Inn

Anacortes Ship Harbor Inn

3 out of 5
5316 Ferry Terminal Road Anacortes WA
Fully refundableReserve now, pay when you stay
$119 nightly
The price is $132 total per night from Apr 13 to Apr 14
$132 total
Apr 13 - Apr 14
Total with taxes and fees
This hotel features a restaurant, a gym, and a bar/lounge. There's no skimping on freebies - guests receive free continental breakfast, free WiFi, and free self ...
9/10 Wonderful! (1,014 reviews)
Responsive staff let us know when EV charger became available and let us borrow a toaster. All rooms have a water view. Convenient location next to the ferry landing. The breakfast menu is limited to diy waffles and cereal. The level of cleanliness is increasingly disappointing. Room and property ...

Reviewed on Apr 11, 2026

Opens in a new windowAnacortes Ship Harbor Inn
Lopez Islander Resort

Lopez Islander Resort

3.5 out of 5
2864 Fisherman Bay Rd Lopez Island WA
Fully refundableReserve now, pay when you stay
$179 nightly
The price is $198 total per night from Apr 13 to Apr 14
$198 total
Apr 13 - Apr 14
Total with taxes and fees
A marina and a restaurant are featured at this smoke-free hotel. Enjoy the seasonal outdoor pool and perks like free self parking and free WiFi. You'll appreciate ...
8.6/10 Excellent! (372 reviews)
It was a clean simple motel stay with excellent water access and a nice view of Fisherman's bay Only complaint was our upstairs neighbors were a bit loud (I suspect they were locals) but we were off-season on a Friday night, it was fine.

Reviewed on Mar 8, 2026

Opens in a new windowLopez Islander Resort
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
$220 nightly
The price is $243 total per night from Apr 13 to Apr 14
$243 total
Apr 13 - Apr 14
Total with taxes and fees
A full-service spa and an indoor pool are featured at this smoke-free hotel. Enjoy the gym and perks like free self parking and free WiFi. There's a hot tub ...
8.8/10 Excellent! (1,001 reviews)
Staff was friendly and pool great. Room was a little dated and a bit dark.

Reviewed on Apr 9, 2026

Opens in a new windowEarthbox Inn & Spa
Friday Harbor House

Friday Harbor House

3.5 out of 5
130 West Street Friday Harbor WA
$345 nightly
The price is $382 total per night from Apr 16 to Apr 17
$382 total
Apr 16 - Apr 17
Total with taxes and fees
A restaurant and a bar/lounge are featured at this hotel. Business travelers can take advantage of the free WiFi in public areas. Free self parking, a terrace, ...
9.6/10 Exceptional! (258 reviews)
Nice location. Beds were kinda firm and no breakfast other than an expensive sit-down restaurant. Room was spacious and great view of harbor. Couple of spiders in the bathroom could use some preventative maintenance.

Reviewed on Apr 9, 2026

Opens in a new windowFriday Harbor House
Roche Harbor Resort

Roche Harbor Resort

3 out of 5
248 Reuben Memorial Dr Friday Harbor WA
$227 nightly
The price is $250 total per night from Apr 13 to Apr 14
$250 total
Apr 13 - Apr 14
Total with taxes and fees
A full-service spa, 3 restaurants, and an outdoor tennis court are all featured at this smoke-free resort. Enjoy the seasonal outdoor pool and perks like free ...
9.2/10 Wonderful! (428 reviews)
Perfect for couples

Reviewed on Apr 12, 2026

Opens in a new windowRoche Harbor Resort
Outlook Inn

Outlook Inn

3 out of 5
171 Main St Eastsound WA
Fully refundableReserve now, pay when you stay
$335 nightly
The price is $370 total per night from Apr 27 to Apr 28
$370 total
Apr 27 - Apr 28
Total with taxes and fees
A restaurant and a bar/lounge are featured at this hotel. WiFi in public areas is free. A garden, a lobby fireplace, and a library are also on offer.
9.2/10 Wonderful! (506 reviews)
Property was a bit tired. Room was clean, bed was comfy, water pressure weak. Staff was friendly and it was quiet and safe. Location was super walkable to town and across from waterfront. A bit overpriced for the overall experience, but would stay again.

Reviewed on Mar 29, 2026

Opens in a new windowOutlook Inn
Landmark Inn on Orcas Island

Landmark Inn on Orcas Island

3 out of 5
67 Main St Eastsound WA
This hotel doesn't skimp on freebies - guests receive free WiFi and free self parking. A terrace, a garden, and express check-in are also on offer.
Opens in a new windowLandmark Inn on Orcas Island
Deer Harbor Inn

Deer Harbor Inn

3 out of 5
33 Inn Lane Deer Harbor WA
$204 nightly
The price is $225 total per night from Apr 13 to Apr 14
$225 total
Apr 13 - Apr 14
Total with taxes and fees
A restaurant, free self parking, and a terrace are among this hotel's amenities. WiFi in public areas is free. A garden, a picnic area, and express check-out ...
Opens in a new windowDeer Harbor Inn
Trumpeter Inn

Trumpeter Inn

3 out of 5
318 Trumpeter Way Friday Harbor WA
$174 nightly
The price is $193 total per night from Apr 14 to Apr 15
$193 total
Apr 14 - Apr 15
Total with taxes and fees
This bed & breakfast features free WiFi in public areas, concierge services, and free self parking. Enjoy the free full breakfast each morning. A garden, a library, ...
10/10 Exceptional! (252 reviews)
Owner is wonderful and breakfast was plentiful and tasty

Reviewed on Mar 30, 2026

Opens in a new windowTrumpeter Inn
Nantucket Inn

Nantucket Inn

3.5 out of 5
3402 Commercial Ave Anacortes WA
$189 nightly
The price is $210 total per night from Apr 13 to Apr 14
$210 total
Apr 13 - Apr 14
Total with taxes and fees
This bed & breakfast features free WiFi in public areas, barbecue grills, and free self parking. Enjoy the free full breakfast each morning. A garden, a lobby ...
9.8/10 Exceptional! (548 reviews)
Yes, great parking! Fantastic B&B!

Reviewed on Apr 8, 2026

Opens in a new windowNantucket Inn
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3 Star Hotels San Juan Island

Maybe you’ve got to travel for work, or perhaps you’re finally ready to book that much-deserved vacation—regardless, it’s time for you to get on a plane and you’re going to make the most of it. You’ve traveled enough to know how important a comfy bed and room service can be, so booking a hotel with all the amenities you need is a priority.

You can find 3 star hotels in San Juan Island that keep you close to all the great sightseeing and activities around the area, or even book a place that’s a bit more secluded, if that’s what you prefer. No matter what you’re looking for—whether you’re all about the location or are invested in on-site perks--Travelocity will help you find the accommodation that works best for you.

When it comes to options, you’ll have them. The San Juan Island 3 star hotels give you plenty of choices as far as access to the best areas, and many also offer a breakfast buffet, as well as plenty of other amenities like high-speed Wi-Fi and an on-site pool or spa.

Whatever you’re looking for on your next getaway, browse Travelocity’s big selection of hotels to ensure you get the best possible deal. Book one of the best 3 star hotels in San Juan Island today!

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