Find and compare 3 Star hotels in San Juan Island

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Top San Juan Island 3 Star hotels

Anacortes Ship Harbor Inn

Anacortes Ship Harbor Inn

3 out of 5
5316 Ferry Terminal Road Anacortes WA
Fully refundableReserve now, pay when you stay
$149 nightly
The price is $165 total per night from Sep 1 to Sep 2
$165 total
Sep 1 - Sep 2
Total with taxes and fees
This hotel features a restaurant, a gym, and a bar/lounge. There's no skimping on freebies - guests receive free continental breakfast, free WiFi, and free self ...
Opens in a new windowAnacortes Ship Harbor Inn
Lopez Islander Resort

Lopez Islander Resort

3.5 out of 5
2864 Fisherman Bay Rd Lopez Island WA
Fully refundableReserve now, pay when you stay
$239 nightly
The price is $264 total per night from Aug 18 to Aug 19
$264 total
Aug 18 - Aug 19
Total with taxes and fees
A marina and a restaurant are featured at this smoke-free hotel. Enjoy the seasonal outdoor pool and perks like free self parking and free WiFi. You'll appreciate ...
8.6/10 Excellent! (412 reviews)
"The bed was uncomfortable but great location and very clean"

Reviewed on Aug 15, 2026

Opens in a new windowLopez Islander Resort
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
$260 nightly
The price is $288 total per night from Sep 7 to Sep 8
$288 total
Sep 7 - Sep 8
Total with taxes and fees
A full-service spa and an indoor pool are featured at this smoke-free hotel. Enjoy the gym and perks like free self parking and free WiFi. There's a hot tub ...
Opens in a new windowEarthbox Inn & Spa
Outlook Inn

Outlook Inn

3 out of 5
171 Main St Eastsound WA
$434 nightly
The price is $479 total per night from Sep 14 to Sep 15
$479 total
Sep 14 - Sep 15
Total with taxes and fees
A restaurant and a bar/lounge are featured at this hotel. WiFi in public areas is free. A garden, a lobby fireplace, and a library are also on offer.
Opens in a new windowOutlook Inn
Friday Harbor House

Friday Harbor House

3.5 out of 5
130 West Street Friday Harbor WA
$509 nightly
The price is $563 total per night from Sep 16 to Sep 17
$563 total
Sep 16 - Sep 17
Total with taxes and fees
A restaurant and a bar/lounge are featured at this hotel. Business travelers can take advantage of the free WiFi in public areas. Free self parking, a terrace, ...
9.6/10 Exceptional! (279 reviews)
"Excellent views over the harbor and nice menu with delicious pancakes However as with many restaurants the service was not good. Why aren’t wait staff trained to come back after a minute to see if they need anything or if everything is ok? Why don’t they come around and fill up water and coffee? ..."

Reviewed on Aug 17, 2026

Opens in a new windowFriday Harbor House
Deer Harbor Inn

Deer Harbor Inn

3 out of 5
33 Inn Lane Deer Harbor WA
$227 nightly
The price is $250 total per night from Sep 16 to Sep 17
$250 total
Sep 16 - Sep 17
Total with taxes and fees
A restaurant, free self parking, and a terrace are among this hotel's amenities. WiFi in public areas is free. A garden, a picnic area, and express check-out ...
8.4/10 Very Good! (218 reviews)
"Our ferry was super late and it was the last one of the night. We were not sure what to expect when we arrived, since there is no front desk and check in was supposed to end at 11 p.m. and it was way past that time. And it was very dark. Unfortunately, we probably made way more noise than we should ..."

Reviewed on Aug 14, 2026

Opens in a new windowDeer Harbor Inn
Roche Harbor Resort

Roche Harbor Resort

3 out of 5
248 Reuben Memorial Dr Friday Harbor WA
$310 nightly
The price is $342 total per night from Sep 16 to Sep 17
$342 total
Sep 16 - Sep 17
Total with taxes and fees
A full-service spa, 3 restaurants, and an outdoor tennis court are all featured at this smoke-free resort. Enjoy the seasonal outdoor pool and perks like free ...
9.2/10 Wonderful! (449 reviews)
"We had a corner suite with a clear view of the marina. Spacious & updated. The staff was very informative and perfession."

Reviewed on Aug 4, 2026

Opens in a new windowRoche Harbor Resort
Landmark Inn on Orcas Island

Landmark Inn on Orcas Island

3 out of 5
67 Main St Eastsound WA
This hotel doesn't skimp on freebies - guests receive free WiFi and free self parking. A terrace, a garden, and express check-in are also on offer.
Opens in a new windowLandmark Inn on Orcas Island
Trumpeter Inn

Trumpeter Inn

3 out of 5
318 Trumpeter Way Friday Harbor WA
$284 nightly
The price is $313 total per night from Sep 1 to Sep 2
$313 total
Sep 1 - Sep 2
Total with taxes and fees
This bed & breakfast features free WiFi in public areas, concierge services, and free self parking. Enjoy the free full breakfast each morning. A garden, a library, ...
10/10 Exceptional! (273 reviews)
"The place was beautiful and quite. Claudia was an amazing host."

Reviewed on Aug 14, 2026

Opens in a new windowTrumpeter Inn
Kangaroo House B&B on Orcas Island

Kangaroo House B&B on Orcas Island

3.5 out of 5
1459 North Beach Road Eastsound WA
$272 nightly
The price is $300 total per night from Aug 30 to Aug 31
$300 total
Aug 30 - Aug 31
Total with taxes and fees
This bed & breakfast doesn't skimp on freebies - guests receive free WiFi and free self parking. A terrace, a garden, and a library are also on offer.
10/10 Exceptional! (177 reviews)
"The proprietors, Jill and Charles, we're terrific. Engaging, kind, and informative. And the breakfasts, yummy. Can't rate this place highly enough."

Reviewed on Aug 6, 2026

Opens in a new windowKangaroo House B&B on Orcas Island
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

3 Star Hotels San Juan Island

Maybe you’ve got to travel for work, or perhaps you’re finally ready to book that much-deserved vacation—regardless, it’s time for you to get on a plane and you’re going to make the most of it. You’ve traveled enough to know how important a comfy bed and room service can be, so booking a hotel with all the amenities you need is a priority.

You can find 3 star hotels in San Juan Island that keep you close to all the great sightseeing and activities around the area, or even book a place that’s a bit more secluded, if that’s what you prefer. No matter what you’re looking for—whether you’re all about the location or are invested in on-site perks--Travelocity will help you find the accommodation that works best for you.

When it comes to options, you’ll have them. The San Juan Island 3 star hotels give you plenty of choices as far as access to the best areas, and many also offer a breakfast buffet, as well as plenty of other amenities like high-speed Wi-Fi and an on-site pool or spa.

Whatever you’re looking for on your next getaway, browse Travelocity’s big selection of hotels to ensure you get the best possible deal. Book one of the best 3 star hotels in San Juan Island today!

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