Book Cheap Hotels in Port Jefferson Station, NY

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Top Port Jefferson Station hotels

Holiday Inn Express Stony Brook by IHG

Holiday Inn Express Stony Brook by IHG

2.5 out of 5
3131 Nesconset Hwy Centereach NY
Free Cancellation
Reserve now, pay when you stay
3.96 mi from Port Jefferson Station
$140 nightly
The price is $160 total per night
$160 total
Jan 4 - Jan 5, 2026
Total with taxes and fees
This hotel features an indoor pool and a 24-hour gym. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. Guests will appreciate freebies like buffet breakfast and free self parking.
Pool
Breakfast included
Hilton Garden Inn Stony Brook

Hilton Garden Inn Stony Brook

3 out of 5
1 Circle Road Stony Brook NY
Free Cancellation
Reserve now, pay when you stay
3.79 mi from Port Jefferson Station
$117 nightly
The price is $133 total per night
$133 total
Jan 19 - Jan 20, 2026
Total with taxes and fees
This hotel features a restaurant, an indoor pool, and a bar/lounge. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. Enjoy the gym and perks like free self parking and a free area shuttle.
Pool
Parking included
Danfords Hotel and Marina

Danfords Hotel and Marina

3.5 out of 5
25 E Broadway Port Jefferson NY
Free Cancellation
Reserve now, pay when you stay
1.29 mi from Port Jefferson Station
$180 nightly
The price is $206 total per night
$206 total
Jan 7 - Jan 8, 2026
Total with taxes and fees
A marina and a restaurant are featured at this smoke-free hotel. Relax with a drink at the bar/lounge and enjoy perks like free WiFi. Self parking, a 24-hour business center, and a terrace are also offered.
Spa
Free WiFi
3 Bedroom Historic Home near Stony Brook Village, University, Hospital & Beaches

3 Bedroom Historic Home near Stony Brook Village, University, Hospital & Beaches

Stony Brook NY
4.93 mi from Port Jefferson Station
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This vacation home features laundry facilities.
Washer
Dryer
Stylish 2BR House Near Stony Brook University and shopping, fully renovated

Stylish 2BR House Near Stony Brook University and shopping, fully renovated

2 out of 5
Stony Brook NY
4.68 mi from Port Jefferson Station
$599 nightly
The price is $684 total per night
$684 total
Jan 12 - Jan 13, 2026
Total with taxes and fees
This vacation home features laundry facilities.
Washer
Dryer
Cozy Country Cottage #4

Cozy Country Cottage #4

Miller Place NY
3.35 mi from Port Jefferson Station
$282 nightly
The price is $322 total per night
$322 total
Jan 3 - Jan 4, 2026
Total with taxes and fees
This cottage features barbecue grills.
Kitchen
Free WiFi
Cozy 4-bedroom house with AC and WiFi in Centereach, New York.

Cozy 4-bedroom house with AC and WiFi in Centereach, New York.

Centereach NY
4.33 mi from Port Jefferson Station
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This vacation home features laundry facilities.
Kitchen
Washer
Beautiful historic home in Stony Brook!

Beautiful historic home in Stony Brook!

2 out of 5
Stony Brook NY
4.86 mi from Port Jefferson Station
Get rates
This vacation home features laundry facilities.
Washer
Dryer
Serenity Haven: Cozy 2-Bedroom Home with Spacious Living & Big Backyard

Serenity Haven: Cozy 2-Bedroom Home with Spacious Living & Big Backyard

Coram NY
4.53 mi from Port Jefferson Station
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This apartment features limo/town car service, a garden, and barbecue grills. Family-friendly amenities include a playground and childcare.
Kitchen
Pet friendly
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Port Jefferson Station hotels essential information

Accommodation
70 hotels
Lowest Price
$133
Highest Price
$684
Popular hotels
Holiday Inn Express Stony Brook by IHG, Hilton Garden Inn Stony Brook, Danfords Hotel and Marina, 3 Bedroom Historic Home near Stony Brook Village, University, Hospital & Beaches, Stylish 2BR House Near Stony Brook University and shopping, fully renovated, Cozy Country Cottage #4, Cozy 4-bedroom house with AC and WiFi in Centereach, New York. , Beautiful historic home in Stony Brook!, Serenity Haven: Cozy 2-Bedroom Home with Spacious Living & Big Backyard

Recent Port Jefferson Station hotel reviews by fellow wanderers

Holiday Inn Express Stony Brook by IHG

Holiday Inn Express Stony Brook by IHG

5 out of 5
Posted 3 days ago
Travelocity Verified Review
"Check in was easy and front desk offered options and confirmed preferences. Room was super clean, bed was comfortable. Shower was a bit low pressure but maybe because we requested higher floor. Breakfast was okay, they ran out of yogurt but that was really it, everything else was 👌"
A verified traveler stayed at Holiday Inn Express Stony Brook by IHG
Holiday Inn Express Stony Brook by IHG

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