Book Independent rooms in San Diego

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Top hotels by Independent in San Diego

Bay Club Hotel & Marina

Bay Club Hotel & Marina

3.5 out of 5
2131 Shelter Island Dr San Diego CA
Free Cancellation
Reserve now, pay when you stay
$129 nightly
The price is $148 total per night
$148 total
Dec 7 - Dec 8
Total with taxes and fees
A marina, a gym, and a restaurant are all featured at this traditional hotel. Traveling on business? Take advantage of the free WiFi in public areas and free internet in public areas. You'll appreciate the outdoor pool, bar/lounge, and laundry facilities.
Pool
Hot Tub
Legacy Resort Hotel & Spa

Legacy Resort Hotel & Spa

4 out of 5
875 Hotel Circle South San Diego CA
Free Cancellation
Reserve now, pay when you stay
$152 nightly
The price is $175 total per night
$175 total
Dec 7 - Dec 8
Total with taxes and fees
A full-service spa, an outdoor pool, and a restaurant are all featured at this smoke-free hotel. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. Enjoy the gym and unwind at the bar/lounge and poolside bar.
Pool
Hot Tub
Lafayette Hotel & Club

Lafayette Hotel & Club

4 out of 5
2223 El Cajon Blvd San Diego CA
Free Cancellation
Reserve now, pay when you stay
$226 nightly
The price is $259 total per night
$259 total
Dec 9 - Dec 10
Total with taxes and fees
This smoke-free hotel features 2 restaurants, 3 bars/lounges, and a poolside bar. Traveling on business? Take advantage of the free WiFi in public areas, laundry service, and valet parking. Enjoy the outdoor pool and conveniences like a 24-hour front desk and concierge services.
Pool
Pet friendly
Margaritaville Hotel San Diego Gaslamp Quarter

Margaritaville Hotel San Diego Gaslamp Quarter

4 out of 5
435 6th Ave San Diego CA
Free Cancellation
Reserve now, pay when you stay
$167 nightly
The price is $194 total per night
$194 total
Dec 14 - Dec 15
Total with taxes and fees
This hotel features a restaurant, an outdoor pool, and a bar/lounge. If you want to take your pet along, this pet-friendly property offers everything you'll need for your pet including food and water bowls. You'll appreciate the 24-hour gym, poolside bar, and rooftop terrace.
Pool
Pet friendly
Heritage Inn San Diego

Heritage Inn San Diego

2 out of 5
3333 Channel Way San Diego CA
Free Cancellation
$60 nightly
The price is $69 total per night
$69 total
Dec 8 - Dec 9
Total with taxes and fees
An outdoor pool is featured at this hotel, along with free self parking. WiFi in public areas is free. Luggage storage is also provided.
Pool
Pet friendly
Paradise Point Resort & Spa

Paradise Point Resort & Spa

4 out of 5
1404 Vacation Rd San Diego CA
Free Cancellation
Reserve now, pay when you stay
$175 nightly
The price is $202 total per night
$202 total
Dec 7 - Dec 8
Total with taxes and fees
This smoke-free resort features a full-service spa, a marina, and 2 restaurants. Family-friendly amenities include mini golf and kid-friendly dining, along with kayaking. Enjoy the 5 outdoor pools and perks like free WiFi.
Pool
Hot Tub
The Dana on Mission Bay

The Dana on Mission Bay

3.5 out of 5
1710 W Mission Bay Dr San Diego CA
Free Cancellation
Reserve now, pay when you stay
$176 nightly
The price is $203 total per night
$203 total
Dec 4 - Dec 5
Total with taxes and fees
A marina, 2 outdoor pools, and 2 hot tubs are all featured at this smoke-free hotel. If you want to take your pet along, this pet-friendly property offers everything you'll need for your pet including food and water bowls. 2 poolside bars, a bar/lounge, and restaurant offer options for drinks and a bit to eat.
Pool
Hot Tub
The Atwood Hotel San Diego - SeaWorld/Zoo

The Atwood Hotel San Diego - SeaWorld/Zoo

3 out of 5
1201 Hotel Circle South San Diego CA
Free Cancellation
Reserve now, pay when you stay
$81 nightly
The price is $94 total per night
$94 total
Dec 8 - Dec 9
Total with taxes and fees
This hotel features a restaurant, a hot tub, and a bar/lounge. WiFi in public areas is free. A coffee shop, a snack bar/deli, and a picnic area are also on offer.
Hot Tub
Pet friendly
California Suites Hotel

California Suites Hotel

2 out of 5
5415 Clairemont Mesa Blvd San Diego CA
Free Cancellation
Reserve now, pay when you stay
$71 nightly
The price is $82 total per night
$82 total
Dec 4 - Dec 5
Total with taxes and fees
This hotel features an outdoor pool and a hot tub. Traveling on business? Take advantage of the free WiFi in public areas and free internet in public areas. Free self parking, a terrace, and a garden are also offered.
Pool
Hot Tub
Bahia Resort Hotel

Bahia Resort Hotel

3.5 out of 5
998 W Mission Bay Dr San Diego CA
Free Cancellation
Reserve now, pay when you stay
$175 nightly
The price is $202 total per night
$202 total
Jan 1 - Jan 2, 2026
Total with taxes and fees
2 outdoor tennis courts, an outdoor pool, and a hot tub are all featured at this smoke-free resort. Spend a day at the beach surfing, or relax with free beach cabanas and sun loungers. Traveling for business? Take advantage of the business center, express check-out, and conference space.
Pool
Hot Tub
Hotel Palmeras Chula Vista

Hotel Palmeras Chula Vista

2 out of 5
230 Broadway Chula Vista CA
Free Cancellation
Reserve now, pay when you stay
$60 nightly
The price is $66 total per night
$66 total
Dec 4 - Dec 5
Total with taxes and fees
This hotel doesn't skimp on freebies - guests receive free WiFi and free self parking. Staff at the 24-hour front desk can provide around-the-clock assistance.
Parking included
Free WiFi
El Cordova Hotel on Coronado Island

El Cordova Hotel on Coronado Island

3.5 out of 5
1351 Orange Ave Coronado CA
Free Cancellation
Reserve now, pay when you stay
$183 nightly
The price is $202 total per night
$202 total
Dec 11 - Dec 12
Total with taxes and fees
This smoke-free hotel includes 2 restaurants, an outdoor pool, and a hot tub. Self parking, a terrace, and a hair salon are also offered.
Pool
Hot Tub
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

A Travel Guide To Independent Hotels In San Diego

You deserve a travel experience that exceeds your expectations and Independent hotels in San Diego can make sure that happens. While you’re vacationing, or even traveling for business, it’s all about you. You shouldn’t have any worries or concerns when you’re on the road, which is why you always choose to stay in accommodations you know and trust.

If you’re ready for excellent customer service at a hotel with a solid reputation, then you know where to go. These hotels will always treat you well, from the thread count of your sheets to the stocked minibar for all your snacking needs. When you’re ready to explore, head out to discover the local sights and get recommendations from the hotel staff on the best restaurants, too. San Diego Independent hotels are the perfect place for your getaway. Many are conveniently located near parks, shopping, restaurants, nightlife, and downtown, giving you the luxury of convenience at an affordable price.

If you think this might tip the budget scale to heavy, don’t worry--Travelocity offers cheap Independent hotels in San Diego. You get more than comfortable accommodations for a very reasonable price. Book your stay through us now and receive special online promotions, discounts, and offers for future travel plans.

Recent San Diego hotel reviews by fellow wanderers

Bay Club Hotel & Marina

Bay Club Hotel & Marina

5 out of 5
Posted 1 day ago
Travelocity Verified Review
"Stay was very nice and relaxing "
A verified traveler stayed at Bay Club Hotel & Marina
Bay Club Hotel & Marina