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Top Marathon 3 Star hotels

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

3 out of 5
2146 Overseas Hwy Marathon FL
Fully refundableReserve now, pay when you stay
$258 nightly
The price is $290 total per night from May 3 to May 4
$290 total
May 3 - May 4
Total with taxes and fees
This smoke-free hotel features 2 outdoor pools, a 24-hour gym, and a restaurant. Traveling on business? Take advantage of the business center and free WiFi in ...
9/10 Wonderful! (1,002 reviews)
Lost swimsuit from laundry room

Reviewed on Apr 10, 2026

Opens in a new windowCourtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys

3 out of 5
13201 Overseas Hwy Marathon FL
Fully refundableReserve now, pay when you stay
$197 nightly
The price is $222 total per night from May 3 to May 4
$222 total
May 3 - May 4
Total with taxes and fees
A marina, 2 outdoor pools, and a 24-hour gym are all featured at this traditional hotel. Traveling on business? Take advantage of the 24-hour business center ...
9.2/10 Wonderful! (1,107 reviews)
Very pleasant staff . Nice rooms that were clean. Nice towels and toiletries. Pools were clean and nice. Beautiful views. Very close to great restaurants.

Reviewed on Apr 8, 2026

Opens in a new windowFairfield Inn & Suites by Marriott Marathon Florida Keys
Coconut Cay Resort & Marina

Coconut Cay Resort & Marina

3 out of 5
7196 Overseas Highway Marathon FL
$178 nightly
The price is $200 total per night from May 4 to May 5
$200 total
May 4 - May 5
Total with taxes and fees
A marina and an outdoor pool are featured at this hotel. Guests will appreciate free perks like free self parking and WiFi in public areas. A terrace, a garden, ...
8.4/10 Very Good! (1,025 reviews)
The room was clean. We were next to the road so it was a little noisy. Restroom was very tiny.

Reviewed on Apr 2, 2026

Opens in a new windowCoconut Cay Resort & Marina
Skipjack Resort & Marina

Skipjack Resort & Marina

3 out of 5
19 Sombrero Blvd Marathon FL
Fully refundableReserve now, pay when you stay
$230 nightly
The price is $258 total per night from May 4 to May 5
$258 total
May 4 - May 5
Total with taxes and fees
A marina and an outdoor pool are featured at this aparthotel. Business travelers can take advantage of the business center. Enjoy the gym and perks like free ...
8.6/10 Excellent! (1,248 reviews)
The hotel didn’t look like the pictures on Expedia. The place is an old renovated motel. It’s over priced and it was a complete false advertisement. The breakfast was gross. The grounds needs updating as well as the entire place. It was in a great location. We made the best of our stay but would ...

Reviewed on Apr 9, 2026

Opens in a new windowSkipjack Resort & Marina
Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway

3 out of 5
1480 Overseas Hwy Marathon FL
$162 nightly
The price is $182 total per night from May 9 to May 10
$182 total
May 9 - May 10
Total with taxes and fees
A marina and an outdoor pool are featured at this hotel. Enjoy a meal from the restaurant and perks like free WiFi. There's a bar/lounge on site, and a garden ...
9/10 Wonderful! (1,014 reviews)
Amazing place. Our 1 bdr was in great condition, oceanside vibe with marina water view. Such a great 3 days with family. Full kitchen with everything needed to cook a meal. Nice pool, clean and relaxing. I would stay at Captain Pipps for a month if I can.

Reviewed on Apr 10, 2026

Opens in a new windowCaptain Pips Marina & Hideaway
Banana Bay Resort & Marina

Banana Bay Resort & Marina

3 out of 5
4590 Overseas Highway Marathon FL
Fully refundableReserve now, pay when you stay
$178 nightly
The price is $200 total per night from May 3 to May 4
$200 total
May 3 - May 4
Total with taxes and fees
2 outdoor tennis courts, an outdoor pool, and a hot tub are all featured at this smoke-free hotel. Relax with a drink at the bar/lounge and enjoy the free continental ...
7.6/10 Good! (1,007 reviews)
It was a positive experience

Reviewed on Apr 10, 2026

Opens in a new windowBanana Bay Resort & Marina
Yacht Haven Marina

Yacht Haven Marina

3.5 out of 5
5 Sombrero Blvd Marathon FL
$294 nightly
The price is $331 total per night from May 7 to May 8
$331 total
May 7 - May 8
Total with taxes and fees
This houseboat doesn't skimp on freebies - guests receive free WiFi and free self parking. A picnic area and barbecue grills are also provided.
9.6/10 Exceptional! (293 reviews)
Stayed for 5 nights friends. The house boat we stayed in was new . Plenty of room for the three of us. Great for a small family. The office was very friendly. Such a fun alternative to a hotel room. We can’t wait to book again next year.

Reviewed on Apr 7, 2026

Opens in a new windowYacht Haven Marina
Seascape Resort & Marina

Seascape Resort & Marina

3 out of 5
1275 76th Oceanside Marathon FL
$410 nightly
The price is $460 total per night from Apr 15 to Apr 16
$460 total
Apr 15 - Apr 16
Total with taxes and fees
This smoke-free motel's private beach and marina are among the highlights. Enjoy a day at the beach kayaking, or relax with sun loungers. Enjoy the outdoor pool ...
9.4/10 Exceptional! (586 reviews)
We had a great 2 night staff over Spring Break. My kids used the 2 paddle boards, also used the bikes to ride the neighborhood. We loved the pool overlooking the ocean. Room 10 was beautiful. Overlooks the pool. Great 2 queen beds and 2 twin beds. Very spacious with 1.5 bathrooms. It was better than ...

Reviewed on Apr 6, 2026

Opens in a new windowSeascape Resort & Marina
Knight's Key Suites

Knight's Key Suites

3 out of 5
40 Kyle Way W Marathon FL
$137 nightly
The price is $152 total per night from May 10 to May 11
$152 total
May 10 - May 11
Total with taxes and fees
An outdoor pool, free self parking, and barbecue grills are featured at this aparthotel. WiFi in public areas is free. A picnic area and a virtual front desk ...
9/10 Wonderful! (1,183 reviews)
Was better then expected but needs more lightning and should require an ID like a license,

Reviewed on Mar 25, 2026

Opens in a new windowKnight's Key Suites
Cabins at Bonefish Bay

Cabins at Bonefish Bay

3 out of 5
12565 Overseas Hwy Marathon FL
An outdoor pool, free self parking, and laundry facilities are featured at this cabin. WiFi in public areas is free. A picnic area and barbecue grills are also ...
9.4/10 Exceptional! (111 reviews)
We had a nice stay here. The place seems brand new still. It's nice that they have kayaks, pickleball equipment, and gas grills available for free use. The one drawback is that this place is far enough north from the main town area that you cannot really walk to much. The Island House restaurant ...

Reviewed on Apr 1, 2026

Opens in a new windowCabins at Bonefish Bay
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3 Star Hotels Marathon

Maybe you’ve got to travel for work, or perhaps you’re finally ready to book that much-deserved vacation—regardless, it’s time for you to get on a plane and you’re going to make the most of it. You’ve traveled enough to know how important a comfy bed and room service can be, so booking a hotel with all the amenities you need is a priority.

You can find 3 star hotels in Marathon that keep you close to all the great sightseeing and activities around the area, or even book a place that’s a bit more secluded, if that’s what you prefer. No matter what you’re looking for—whether you’re all about the location or are invested in on-site perks--Travelocity will help you find the accommodation that works best for you.

When it comes to options, you’ll have them. The Marathon 3 star hotels give you plenty of choices as far as access to the best areas, and many also offer a breakfast buffet, as well as plenty of other amenities like high-speed Wi-Fi and an on-site pool or spa.

Whatever you’re looking for on your next getaway, browse Travelocity’s big selection of hotels to ensure you get the best possible deal. Book one of the best 3 star hotels in Marathon today!

Recent Marathon hotel reviews by fellow wanderers