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Top Marathon 3 Star hotels

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys

3 out of 5
13201 Overseas Hwy Marathon FL
Fully refundableReserve now, pay when you stay
$161 nightly
The price is $181 total per night from Jun 21 to Jun 22
$181 total
Jun 21 - Jun 22
Total with taxes and fees
A marina, 2 outdoor pools, and a 24-hour gym are all featured at this traditional hotel. Traveling on business? Take advantage of the 24-hour business center ...
9.2/10 Wonderful! (1,142 reviews)
"Location"

Reviewed on May 26, 2026

Opens in a new windowFairfield Inn & Suites by Marriott Marathon Florida Keys
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

3 out of 5
2146 Overseas Hwy Marathon FL
Fully refundableReserve now, pay when you stay
$218 nightly
The price is $245 total per night from Jun 2 to Jun 3
$245 total
Jun 2 - Jun 3
Total with taxes and fees
This smoke-free hotel features 2 outdoor pools, a 24-hour gym, and a restaurant. Traveling on business? Take advantage of the business center and free WiFi in ...
9/10 Wonderful! (1,003 reviews)
"The building needs major repairs! The hallways on the first and second floors were hot. Housekeeping and others fanned themselves as they walked through. We were told the HVAC unit was “in need of repairs.” They remained the same temperature all five days. The elevators were down one day. People ..."

Reviewed on May 26, 2026

Opens in a new windowCourtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
Banana Bay Resort & Marina

Banana Bay Resort & Marina

3 out of 5
4590 Overseas Highway Marathon FL
Fully refundableReserve now, pay when you stay
$192 nightly
The price is $216 total per night from Jun 7 to Jun 8
$216 total
Jun 7 - Jun 8
Total with taxes and fees
2 outdoor tennis courts, an outdoor pool, and a hot tub are all featured at this smoke-free hotel. Relax with a drink at the bar/lounge and enjoy the free continental ...
7.6/10 Good! (1,007 reviews)
"The telephone to call reception does not work, the tv channels available are the most basic, not even showing the local channels…..we paid for two nights and left after the first night. Did not even bother to ask for a refund."

Reviewed on May 26, 2026

Opens in a new windowBanana Bay Resort & Marina
Coconut Cay Resort & Marina

Coconut Cay Resort & Marina

3 out of 5
7196 Overseas Highway Marathon FL
$156 nightly
The price is $176 total per night from May 28 to May 29
$176 total
May 28 - May 29
Total with taxes and fees
A marina and an outdoor pool are featured at this hotel. Guests will appreciate free perks like free self parking and WiFi in public areas. A terrace, a garden, ...
8.4/10 Very Good! (1,024 reviews)
"Great property. Ideal location. Staff was friendly. My only complaint is the early check-out. I don't understand why its not 12p."

Reviewed on May 24, 2026

Opens in a new windowCoconut Cay Resort & Marina
Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway

3 out of 5
1480 Overseas Hwy Marathon FL
$125 nightly
The price is $141 total per night from May 28 to May 29
$141 total
May 28 - May 29
Total with taxes and fees
A marina and an outdoor pool are featured at this hotel. Enjoy a meal from the restaurant and perks like free WiFi. There's a bar/lounge on site, and a garden ...
9/10 Wonderful! (1,005 reviews)
"We have stayed here before and liked it. It is the keys old and rustic vibes. It that’s fine and we enjoyed our first stay. But we came back and stayed at the Marlin Apartment and it was terrible. AC did not work, TV’s did not work, they turned on but no channels and it would not let you log on to ..."

Reviewed on May 25, 2026

Opens in a new windowCaptain Pips Marina & Hideaway
Yacht Haven Marina

Yacht Haven Marina

3.5 out of 5
5 Sombrero Blvd Marathon FL
$270 nightly
The price is $304 total per night from Jun 2 to Jun 3
$304 total
Jun 2 - Jun 3
Total with taxes and fees
This cruise ship doesn't skimp on freebies - guests receive free WiFi and free self parking. A picnic area and barbecue grills are also provided.
9.6/10 Exceptional! (317 reviews)
"The property was amazing. The views were immaculate, and there was free kayaks. Also manatees!!!!"

Reviewed on May 25, 2026

Opens in a new windowYacht Haven Marina
Skipjack Resort & Marina

Skipjack Resort & Marina

3 out of 5
19 Sombrero Blvd Marathon FL
Fully refundableReserve now, pay when you stay
$199 nightly
The price is $224 total per night from Jun 7 to Jun 8
$224 total
Jun 7 - Jun 8
Total with taxes and fees
A marina and an outdoor pool are featured at this aparthotel. Business travelers can take advantage of the business center. Enjoy the gym and perks like free ...
8.6/10 Excellent! (1,267 reviews)
"Villas were clean not sure about hotel itself Lobby was pleasant and pool bar calamari was great"

Reviewed on May 25, 2026

Opens in a new windowSkipjack Resort & Marina
Knight's Key Suites

Knight's Key Suites

3 out of 5
40 Kyle Way W Marathon FL
$107 nightly
The price is $118 total per night from Jun 17 to Jun 18
$118 total
Jun 17 - Jun 18
Total with taxes and fees
An outdoor pool, free self parking, and barbecue grills are featured at this aparthotel. WiFi in public areas is free. A picnic area and a virtual front desk ...
9/10 Wonderful! (1,196 reviews)
"Great view of the 7 mile bridge, great restaurant close by"

Reviewed on May 24, 2026

Opens in a new windowKnight's Key Suites
Tropical Cottages

Tropical Cottages

3 out of 5
243 61st Street Gulf Marathon FL
$125 nightly
The price is $141 total per night from May 31 to Jun 1
$141 total
May 31 - Jun 1
Total with taxes and fees
A restaurant and a bar/lounge are featured at this cottage. Free self parking, a garden, and a snack bar/deli are also offered.
8.6/10 Excellent! (977 reviews)
"Loved how the bar is right there outside the rooms. Can’t say anything bad besides it’s hard to see the sign when looking for the address!"

Reviewed on May 25, 2026

Opens in a new windowTropical Cottages
Cabins at Bonefish Bay

Cabins at Bonefish Bay

3 out of 5
12565 Overseas Hwy Marathon FL
An outdoor pool, free self parking, and laundry facilities are featured at this cabin. WiFi in public areas is free. A picnic area and barbecue grills are also ...
9.4/10 Exceptional! (115 reviews)
"Excellent location for our trip. Clear easy directions to pick up keys. We enjoyed staying right on the water. Thanks for a fantastic stay."

Reviewed on May 21, 2026

Opens in a new windowCabins at Bonefish Bay
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

3 Star Hotels Marathon

Maybe you’ve got to travel for work, or perhaps you’re finally ready to book that much-deserved vacation—regardless, it’s time for you to get on a plane and you’re going to make the most of it. You’ve traveled enough to know how important a comfy bed and room service can be, so booking a hotel with all the amenities you need is a priority.

You can find 3 star hotels in Marathon that keep you close to all the great sightseeing and activities around the area, or even book a place that’s a bit more secluded, if that’s what you prefer. No matter what you’re looking for—whether you’re all about the location or are invested in on-site perks--Travelocity will help you find the accommodation that works best for you.

When it comes to options, you’ll have them. The Marathon 3 star hotels give you plenty of choices as far as access to the best areas, and many also offer a breakfast buffet, as well as plenty of other amenities like high-speed Wi-Fi and an on-site pool or spa.

Whatever you’re looking for on your next getaway, browse Travelocity’s big selection of hotels to ensure you get the best possible deal. Book one of the best 3 star hotels in Marathon today!

Recent Marathon hotel reviews by fellow wanderers