Find and compare 2 Star hotels in San Juan Islands

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Top San Juan Islands 2 Star hotels

The Orca Inn

770 Mullis St Friday Harbor WA

Fully refundableReserve now, pay when you stay

$128 nightly

$142 total

Jun 25 - Jun 26

Total with taxes and fees

This hotel doesn't skimp on freebies - guests receive free WiFi and free self parking. Luggage storage is also provided.

8/10 Very Good! (16 reviews)

"Room for clean and close to all amenities. Little cozy but well maintained."

Reviewed on Jun 18, 2026

Friday Harbor Suites

680 Spring Street Friday Harbor WA

Fully refundableReserve now, pay when you stay

$197 nightly

$218 total

Jun 22 - Jun 23

Total with taxes and fees

A hot tub, free self parking, and concierge services are featured at this hotel. Guests will appreciate perks like free WiFi and a free ferry terminal shuttle. ...

8.6/10 Excellent! (1,001 reviews)

"Excellent rooms and great location- great for families!"

Reviewed on Jun 17, 2026

Rosario Resort

1624 Rosario Rd Eastsound WA

Fully refundableReserve now, pay when you stay

$245 nightly

$271 total

Jun 21 - Jun 22

Total with taxes and fees

A seasonal outdoor pool, free self parking, and laundry facilities are featured at this hotel. WiFi in public areas is free. Express check-out, luggage storage, ...

7.4/10 Good! (124 reviews)

"The room had a wet dog smell and we suffered through our pet allergies all 3 days. The amenities were not what we expected for a resort: the restaurant was only open 1 of the 3 days, the Mansion with the pool was closed all 3 days, and there were minimal beach access points at the hotel. Had to walk ..."

Reviewed on Jun 17, 2026

Snug Harbor Resort

1997 Mitchell Bay Rd Friday Harbor WA

$449 nightly

$495 total

Jul 7 - Jul 8

Total with taxes and fees

A marina, a 24-hour gym, and a restaurant are all featured at this smoke-free hotel. Enjoy the gym and perks like free self parking and free WiFi. A coffee shop, ...

9.8/10 Exceptional! (521 reviews)

"This is a beautiful, relaxing property. Everything from the cleanliness and comfort of the cabins to the grounds maintenance to the friendliness of the staff exceeded our expectations. I'd love to come back!"

Reviewed on Jun 17, 2026

Bird Rock Hotel

35 First Street Friday Harbor WA

$110 nightly

$122 total

Jun 24 - Jun 25

Total with taxes and fees

Free WiFi in public areas, a terrace, and a garden are available at this hotel. A picnic area, express check-in, and express check-out are also on offer.

8.8/10 Excellent! (372 reviews)

"The reason for the 3 on staff, there was no staff. If you need to either go to the Earthbox hotel or call them."

Reviewed on Jun 16, 2026

Discovery Inn

1016 Guard St. Friday Harbor WA

$254 nightly

$281 total

Jun 25 - Jun 26

Total with taxes and fees

A hot tub is featured at this hotel, along with free self parking. WiFi in public areas is free. Luggage storage is also provided.

10/10 Exceptional! (14 reviews)

"Great little spot that was close enough to town and had more than we expected for amenities. Really nice stay!"

Reviewed on Jun 16, 2026

The Edenwild Boutique Inn

132 Lopez Rd Lopez Island WA

Fully refundableReserve now, pay when you stay

$184 nightly

$203 total

Jun 21 - Jun 22

Total with taxes and fees

A restaurant, free self parking, and a terrace are among this hotel's amenities. WiFi in public areas is free. A garden, a snack bar/deli, and a lobby fireplace ...

9.4/10 Exceptional! (266 reviews)

"enjoyed stay look forward to next visit"

Reviewed on Jun 8, 2026

Deer Harbor Cottages

68 Inn Ln Deer Harbor WA

A restaurant and a bar/lounge are featured at this resort. Free self parking, barbecue grills, and a virtual front desk are also on offer.

9/10 Wonderful! (9 reviews)

"Was nice and clean"

Reviewed on Feb 19, 2026

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Saturn's Return

2687 W Valley Rd Friday Harbor WA

$313 nightly

$346 total

Jun 29 - Jun 30

Total with taxes and fees

This bed & breakfast features free self parking and free WiFi in public areas. Enjoy the free buffet breakfast each morning. A garden, a communal living room, ...

9.6/10 Exceptional! (24 reviews)

"Family owned bed-and-breakfast/working farm with simple but very comfortable accommodations. Owner hosts were very engaging and attentive and engaging making themselves available to answer any questions. Taking hiking trails in this incredibly peaceful setting was an unexpected highlight."

Reviewed on May 20, 2026

Lopez Farm Cottages & Tent Camping

607 Fisherman Bay Rd Lopez Island WA

This hotel doesn't skimp on freebies - guests receive free WiFi and free self parking. Express check-in is also provided.

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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

2 Star Hotels San Juan Islands

Looking to break out of your routine for some much needed rest and relaxation? Or maybe you’ve already decided it’s time for a trip and are trying to find affordable hotels in San Juan Islands that won’t bust your travel budget?

San Juan Islands 2 star hotels will give you everything you need to enjoy the city like a local, saving a ton of money so you can hit all the hot spots in town.

Have a delicious breakfast at your hotel to fuel up for your day of sightseeing, then enjoy amenities like fresh towels and linens, as well as a nice hot shower to unwind after a busy day of experiencing everything the city has to offer.

As you explore a new locale, or one you love to visit over and over, you can rest easy knowing you’re staying in a great hotel that lets you discover San Juan Islands and welcomes you back to a clean, comfortable room at night.

Browse Travelocity’s wide selection of 2 star hotels in San Juan Islands and find one that’s perfectly priced and places you next to all the best activities and sights. The town is your oyster, and we can help you seek out its secrets while sticking to your budget.