Book Hotels in Henderson Harbor, NY

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Top Henderson Harbor hotels

The GillHouse

The GillHouse

2 out of 5
13565 County Rte 123 Henderson Harbor NY
Fully refundableReserve now, pay when you stay
$158 nightly
The price is $175 total per night from Jun 22 to Jun 23
$175 total
Jun 22 - Jun 23
Total with taxes and fees
A restaurant and a bar/lounge are featured at this hotel. Guests will appreciate free perks like free self parking and WiFi in public areas. A snack bar/deli ...
"We were pleasantly surpised. The view of the lake was beautiful! The staff was very friendly and accommodating. We will definitely go back."

Reviewed on Jun 7, 2026

Opens in a new windowThe GillHouse
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

2.5 out of 5
1290 Arsenal St Watertown NY
Fully refundable
$131 nightly
The price is $145 total per night from Jun 21 to Jun 22
$145 total
Jun 21 - Jun 22
Total with taxes and fees
A restaurant and an indoor pool are featured at this hotel. Traveling on business? Take advantage of the business center and free WiFi in public areas. Guests ...
"This was our 2nd year staying here for our girls weekend. We enjoy how easy and friendly the check in was. We were early but had no problem checking in. The room was clean, the beds comfortable and it was quiet. The pool was wonderful and breakfast hade a nice variety of. We will be back again!"

Reviewed on Jun 10, 2026

Opens in a new windowHoliday Inn Express Hotel & Suites Watertown-Thousand Island by IHG
Hilton Garden Inn Watertown/Thousand Islands

Hilton Garden Inn Watertown/Thousand Islands

3 out of 5
1290 Arsenal Street Watertown NY
Fully refundableReserve now, pay when you stay
$129 nightly
The price is $143 total per night from Jun 21 to Jun 22
$143 total
Jun 21 - Jun 22
Total with taxes and fees
This hotel features an indoor pool, a hot tub, and a restaurant. Traveling on business? Take advantage of the free WiFi in public areas, conference center, and ...
"Outdated room missing wall pictures and small rooms"

Reviewed on Jun 6, 2026

Opens in a new windowHilton Garden Inn Watertown/Thousand Islands
Fairfield Inn & Suites Watertown Thousand Islands

Fairfield Inn & Suites Watertown Thousand Islands

3 out of 5
250 Commerce Park Dr Watertown NY
Fully refundableReserve now, pay when you stay
$128 nightly
The price is $142 total per night from Jun 21 to Jun 22
$142 total
Jun 21 - Jun 22
Total with taxes and fees
This hotel features an indoor pool and a 24-hour gym. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. Guests ...
"Good place to stay."

Reviewed on May 27, 2026

Opens in a new windowFairfield Inn & Suites Watertown Thousand Islands
Beautiful Lake House w/ Private Beach

Beautiful Lake House w/ Private Beach

Three Mile Bay NY
This vacation home features a garden, laundry facilities, and barbecue grills.
"Well I’ll start off with there is plenty of drinking water because the tap water is sulphur water. The house was not clean, the shower curtain was full of black moldy water (we cleaned it), the rear door to the deck and water was covered in bugs and cobwebs on the inside of the screens and doors ..."

Reviewed on Jun 1, 2026

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Opens in a new windowBeautiful Lake House w/ Private Beach
Days Inn by Wyndham Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

2 out of 5
25940 US Route 11 Calcium NY
Fully refundableReserve now, pay when you stay
$92 nightly
The price is $102 total per night from Jun 14 to Jun 15
$102 total
Jun 14 - Jun 15
Total with taxes and fees
This hotel doesn't skimp on freebies - guests receive free continental breakfast, free WiFi, and free self parking. Traveling on business? Take advantage of ...
"If you like a big TV you got it. Hair dryer missing."

Reviewed on Jun 10, 2026

Opens in a new windowDays Inn by Wyndham Watertown Fort Drum
Comfort Inn & Suites Watertown - 1000 Islands

Comfort Inn & Suites Watertown - 1000 Islands

2.5 out of 5
110 Commerce Park Drive Watertown NY
Fully refundable
$105 nightly
The price is $117 total per night from Jul 5 to Jul 6
$117 total
Jul 5 - Jul 6
Total with taxes and fees
This hotel features an indoor pool and a gym. Traveling on business? Take advantage of the business center, free WiFi in public areas, and free airport shuttle. ...
"The hotel was very comfortable with good AC in the room and WIFI throughout. You could tell that the hotel had seen better days, i.e dated lobby area, pool was broken and link to restaurant was no longer useable since Denny's was closed. The breakfast was very adequate, with some hot food and good ..."

Reviewed on Jun 10, 2026

Opens in a new windowComfort Inn & Suites Watertown - 1000 Islands
Quality Inn & Suites Watertown Fort Drum

Quality Inn & Suites Watertown Fort Drum

2.5 out of 5
8000 Virginia Smith Drive Calcium NY
Fully refundable
$85 nightly
The price is $94 total per night from Jul 5 to Jul 6
$94 total
Jul 5 - Jul 6
Total with taxes and fees
This hotel doesn't skimp on freebies - guests receive free continental breakfast, free WiFi, and free self parking. Business travelers can take advantage of ...
"Room was very clean and bed was comfortable. Place is very outdated though but stay was fine. Breakfast is another story. Eggs totally gross and tasted like chemicals"

Reviewed on Jun 4, 2026

Opens in a new windowQuality Inn & Suites Watertown Fort Drum
Ramada by Wyndham Watertown/Thousand Islands NY

Ramada by Wyndham Watertown/Thousand Islands NY

2.5 out of 5
21000 NY State Rt 3 Watertown NY
Fully refundableReserve now, pay when you stay
$79 nightly
The price is $87 total per night from Jun 14 to Jun 15
$87 total
Jun 14 - Jun 15
Total with taxes and fees
This hotel features a 24-hour gym and a seasonal outdoor pool. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. ...
"Quiet, comfortable place to stay with good breakfast"

Reviewed on Jun 12, 2026

Opens in a new windowRamada by Wyndham Watertown/Thousand Islands NY
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

What are the top kid-friendly hotels in Henderson Harbor?
Family trips are where amazing memories are made, but traveling with little ones can be a challenge. These kid-friendly Henderson Harbor hotels come with perks that aim to keep young and old alike comfortable and happy: The whole team will love staying at The Cottage at Rays Bay · Cottage with hot tub and gorgeous sunsets!. A travel crib and a king bed are among the things that help make this property a sought-after option. Also look into Lake Ontario (Henderson, NY). It offers a deck, a king bed and lots of opportunities for precious family time.
Where can I find cheap hotels in Henderson Harbor?
At Travelocity you'll find really nice hotels in Henderson Harbor at great prices. We source incredible prices with our trusted partners, so you have a tempting selection of cheap hotels to choose from. If you can be flexible on dates and location, consider staying at a hotel near Henderson Harbor rather than in Henderson Harbor. We may find you even better rates, too.
How do I find the best Henderson Harbor hotel deals?
Simple! On Travelocity, look through the fantastic offers we've already found in Henderson Harbor then use our filters to find a great deal that's perfect for you. Enter your travel dates, select the number of rooms you need, and we'll do the rest. You can get great discounts on flights and car hire, too, when you bundle.
How much does it cost to stay in a hotel in Henderson Harbor?
The cheapest hotel in Henderson Harbor is $87. This price was available within the past 7 days, for stays with a check-in date within the next year. Of course, the price you pay depends on your dates of travel, the length of your stay, and the hotel's location. Prices and availability are subject to change. Additional terms apply.
How many hotels are in Henderson Harbor?
There are 187 hotels in Henderson Harbor on Travelocity.
What are the best hotels in Henderson Harbor?
Henderson Harbor has so many great hotels to choose from at Travelocity — and it's so easy to find the perfect one. Just choose one of our popular pre-selected hotels with great reviews, or you can refine your search to build your ideal stay. Simply filter hotels based on price or star rating, or select properties with a pool, a hot tub, or a range of other amenities and pick the best place to stay in Henderson Harbor for you!
When is the best time to visit Henderson Harbor?
If you want the joy of a fun-filled trip in peak season, visit Henderson Harbor during June, July and August. If you'd prefer the peace of off-season, book a stay during quieter months, such as November, December and January.
When is the cheapest time to stay in Henderson Harbor?
Based on historic data is usually the cheapest month to visit Henderson Harbor. However, we have incredible deals all year round, so we're confident you'll find a room in your budget whenever you choose to travel.
Are there any great family-friendly hotels in Henderson Harbor?
There are multiple hotels in Henderson Harbor that will please the whole family. Do you need adjoining rooms, babysitting services or a swimming pool? We've got you covered. Use our family filter to narrow your search down and use guest reviews to help you pick the perfect place for your next family trip to Henderson Harbor. We have plenty of kid-friendly hotels in Henderson Harbor to choose from on Travelocity!
Why book a hotel in Henderson Harbor through Travelocity?
Because we have the top hotels in Henderson Harbor! We want to help you travel more and worry less. That's why we've put the most amazing hotel, car rental, and flight deals in one place. When you search for hotels with us, you know you're getting fantastic prices with no hidden fees and free cancellation on most properties up to 24 hours before your stay. If you become a Travelocity member, you also get exclusive member discounts. Sign up today!
How do I cancel my hotel booking in Henderson Harbor on Travelocity?
Canceling your booking with Travelocity is easy. Sign into your account and select My Trips. Here, you will see your cancellation options. We offer free cancellation on many properties.

Recent Henderson Harbor hotel reviews by fellow wanderers

Ramada by Wyndham Watertown/Thousand Islands NY

Ramada by Wyndham Watertown/Thousand Islands NY

5 out of 5
Posted 15 hours ago
Travelocity Verified Review
"Quiet, comfortable place to stay with good breakfast"
A verified traveler stayed at Ramada by Wyndham Watertown/Thousand Islands NY
Ramada by Wyndham Watertown/Thousand Islands NY

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