Book Hotels in Henderson Harbor, NY
Cabins, apartments, houseboats! We offer comfortable & private vacation rentals
Save an extra 10% or more on select hotels with Member Discounts
Access exclusive hotel deals, only with the Travelocity app
Top Henderson Harbor hotels

Beautiful Lake House w/ Private Beach
Three Mile Bay NY
This vacation home features a garden, laundry facilities, and barbecue grills.
The location on the water is amazing, and the house is even better in person than in the pictures. The house is spacious and the main living area has wonderful floor to ceiling views. We had a great time here and our dog especially loved playing in the water.
Reviewed on Oct 20, 2025

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG
1290 Arsenal St Watertown NY
Fully refundable
$105 nightly
The price is $117 total per night from Mar 29 to Mar 30
$117 total
Mar 29 - Mar 30
Total with taxes and fees
A restaurant and an indoor pool are featured at this hotel. Traveling on business? Take advantage of the business center and free WiFi in public areas. Guests ...
Staff very friendly
Reviewed on Mar 2, 2026

Hilton Garden Inn Watertown/Thousand Islands
1290 Arsenal Street Watertown NY
Fully refundableReserve now, pay when you stay
$117 nightly
The price is $129 total per night from Mar 27 to Mar 28
$129 total
Mar 27 - Mar 28
Total with taxes and fees
This hotel features an indoor pool, a hot tub, and a restaurant. Traveling on business? Take advantage of the free WiFi in public areas, conference center, and ...
The staff were all very friendly and helpful. Food was very good.
Reviewed on Mar 8, 2026

Fairfield Inn & Suites Watertown Thousand Islands
250 Commerce Park Dr Watertown NY
Fully refundableReserve now, pay when you stay
$124 nightly
The price is $138 total per night from Mar 11 to Mar 12
$138 total
Mar 11 - Mar 12
Total with taxes and fees
This hotel features an indoor pool and a 24-hour gym. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. Guests ...
Staff outstanding
Reviewed on Mar 10, 2026

Hampton Inn Watertown
155 Commerce Park Dr Watertown NY
Fully refundableReserve now, pay when you stay
$98 nightly
The price is $108 total per night from Mar 22 to Mar 23
$108 total
Mar 22 - Mar 23
Total with taxes and fees
This hotel features an indoor pool and a gym. There's no skimping on freebies - guests receive free buffet breakfast, free WiFi, and free self parking. A 24-hour ...
Staff was very polite, the room was beautiful and the pool was awesome!!
Reviewed on Feb 28, 2026

Days Inn by Wyndham Watertown Fort Drum
25940 US Route 11 Calcium NY
Fully refundableReserve now, pay when you stay
$56 nightly
The price is $62 total per night from Mar 30 to Mar 31
$62 total
Mar 30 - Mar 31
Total with taxes and fees
This hotel doesn't skimp on freebies - guests receive free continental breakfast, free WiFi, and free self parking. Traveling on business? Take advantage of ...
This was our second wonderful stay. The staff are very friendly and helpful. Always a clean, attractive room.
Reviewed on Mar 9, 2026

Comfort Inn & Suites Watertown - 1000 Islands
110 Commerce Park Drive Watertown NY
Fully refundableReserve now, pay when you stay
$80 nightly
The price is $89 total per night from Mar 22 to Mar 23
$89 total
Mar 22 - Mar 23
Total with taxes and fees
This hotel features an indoor pool and a gym. Traveling on business? Take advantage of the business center, free WiFi in public areas, and free airport shuttle. ...
Clean Room, Very Professional staff, good breakfast, nice gym. Pool was closed for past 2 months. Heating was very noisy.
Reviewed on Mar 7, 2026

Quality Inn & Suites Watertown Fort Drum
8000 Virginia Smith Drive Calcium NY
Fully refundableReserve now, pay when you stay
$60 nightly
The price is $66 total per night from Mar 22 to Mar 23
$66 total
Mar 22 - Mar 23
Total with taxes and fees
This hotel doesn't skimp on freebies - guests receive free continental breakfast, free WiFi, and free self parking. Business travelers can take advantage of ...
Very bright and well lit parking area, always super clean throughout,.
Reviewed on Mar 10, 2026

Ramada by Wyndham Watertown/Thousand Islands NY
21000 NY State Rt 3 Watertown NY
Fully refundableReserve now, pay when you stay
$60 nightly
The price is $66 total per night from Mar 24 to Mar 25
$66 total
Mar 24 - Mar 25
Total with taxes and fees
This hotel features a 24-hour gym and a seasonal outdoor pool. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. ...
Place was clean but needs update!
Reviewed on Mar 7, 2026
Don't see what you're looking for?
See all available properties in Henderson Harbor
View all propertiesLowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Frequently asked questions
Recent Henderson Harbor hotel reviews by fellow wanderers

Fairfield Inn & Suites Watertown Thousand Islands
5 out of 5
Posted 3 hours ago
Travelocity Verified Review
"Staff outstanding "
A verified traveler stayed at Fairfield Inn & Suites Watertown Thousand Islands
Explore More Ways to Travel with Travelocity
- 3 Star Hotels in Henderson
- Henderson Hotels
- Motels in Henderson
- Vacation Homes in Henderson
- Resorts in Henderson
- Hotels near Dry Hill Ski Area
- Cabins in Pillar Point
- Chaumont Hotels
- Hotels near Yellow Barn Winery
- 3 Star Hotels in Adams Center
- Apartments in Adams Center
- Cottages in Adams Center
- Guest Houses in Adams Center
- Adams Center Hotels
- Lodges in Adams Center
- Motels in Adams Center
- Hotels near Southwick Beach State Park
- Hotels near Jefferson Community College
- Hotels near Burrville Cider Mill
- Pierrepont Manor Hotels
- Lorraine Hotels
- Town of Hounsfield Hotels
- 3 Star Hotels in Adams
- B&B in Adams
- Cabins in Adams
- Guest Houses in Adams
- Adams Hotels
- Rv Parks in Adams
- Hotels near Sandy Island Beach State Park
- Hotels near Salmon Run Mall
- Lacona Hotels
- Hotels near Watertown Intl.
- Hotels near Saiff Charters
- Winona State Forest Hotels
- Sandy Creek Hotels
- Farmstay in Mannsville
- B&B in Mannsville
- Guest Houses in Mannsville
- Mannsville Hotels
- Motels in Mannsville
- Vacation Homes in Mannsville
- Three Mile Bay Hotels
- Cape Vincent Hotels
- Glen Park Hotels
- Apartments in Dexter
- Cabins in Dexter
- Condos in Dexter
- Cottages in Dexter
- Guest Houses in Dexter
- Hotels with Pools in Dexter
- Dexter Hotels
- Inns in Dexter
- Lodges in Dexter
- Motels in Dexter
- Vacation Homes in Dexter
- Rv Parks in Dexter
- Hotels near Westcott Beach State Park
- Hotels near Robert G. Wehle State Park
- Hotels near Sackets Harbor Battlefield State Park
- Cabins in Sackets Harbor
- Condos in Sackets Harbor
- Cottages in Sackets Harbor
- Hostels in Sackets Harbor
- Hotels with Balconies in Sackets Harbor
- Hotels with Free Breakfast in Sackets Harbor
- Hotels with Hot Tubs in Sackets Harbor
- Romantic Getaways & Hotels in Sackets Harbor
- Spa Resorts & in Sackets Harbor
- Winery Hotels in Sackets Harbor
- Sackets Harbor Hotels
- Motels in Sackets Harbor
- Vacation Homes in Sackets Harbor
- Hotels near New York State Zoo at Thompson Park
- Watertown Hotels
- Flights to Adams
- Flights from Watertown Intl.
- American Airlines Cincinnati (CVG) to Watertown (ART) flights
- American Airlines Dallas (DFW) to Watertown (ART) flights
- American Airlines Boston (BOS) to Watertown (ART) flights
- American Airlines Raleigh (RDU) to Watertown (ART) flights
- Delta Atlanta (ATL) to Watertown (ART) flights
- Delta New York (JFK) to Watertown (ART) flights
- United Washington (IAD) to Watertown (ART) flights
- Flights from Boise (BOI) to Watertown (ART)
- Flights from Islip (ISP) to Watertown (ART)
- Flights from Los Angeles (LAX) to Watertown (ART)
- Flights from Philadelphia (PHL) to Watertown (ART)
- Flights from Tampa (TPA) to Watertown (ART)
- Flights to Dexter
- Flights to Sackets Harbor
- Flights from Boston to Sackets Harbor
- Flights from Milwaukee to Sackets Harbor
- Flights from Lexington to Sackets Harbor






