Book Hotels in Clayton, IA

Start date: Check-in selected.
To Date
End date: Check-out

Cabins, apartments, houseboats! We offer comfortable & private vacation rentals

Save an extra 10% or more on select hotels with Member Discounts

Access exclusive hotel deals, only with the Travelocity app

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Neighborhood
Neighborhood
Traveler experience
Traveler experience
Popular locations
Popular locations
Meal plans available
Meal plans available
Amenities
Amenities
Accessibility
Accessibility

Top Clayton hotels

Waterfront Hotel

Waterfront Hotel

3 out of 5
113 S Main St Prairie Du Chien WI
Fully refundableReserve now, pay when you stay
$116 nightly
The price is $129 total per night from Jan 25 to Jan 26
$129 total
Jan 25 - Jan 26
Total with taxes and fees
This hotel features a restaurant, a 24-hour gym, and a bar/lounge. There's no skimping on freebies - guests receive free continental breakfast, free WiFi, and ...
Yes

Reviewed on Jan 9, 2026

Opens in a new windowWaterfront Hotel
Comfort Inn & Suites

Comfort Inn & Suites

2.5 out of 5
100 North Street Marquette IA
Fully refundableReserve now, pay when you stay
$71 nightly
The price is $80 total per night from Jan 28 to Jan 29
$80 total
Jan 28 - Jan 29
Total with taxes and fees
This hotel features a gym and a bar/lounge. Traveling on business? Take advantage of the 24-hour business center and free WiFi in public areas. Guests will appreciate ...
Great location.

Reviewed on Jan 18, 2026

Opens in a new windowComfort Inn & Suites
Clayton Savings Bank - One Block To Might Mississippi River!

Clayton Savings Bank - One Block To Might Mississippi River!

2 out of 5
Garnavillo IA
This vacation home includes a garden and laundry facilities.
our only complaint was the property boasted wi-fi and it did not the internet was not turned on. Numerous attempts to contact property manager went unanswered. even customer service reps from vrbo got no resolution

Reviewed on Oct 21, 2025

Opens in a new windowClayton Savings Bank - One Block To Might Mississippi River!
Black Bear A-Frame Waterfront Log Cabin with Hot Tub Jacuzzi

Black Bear A-Frame Waterfront Log Cabin with Hot Tub Jacuzzi

Harpers Ferry IA
A hot tub is featured at this cabin, along with barbecue grills.
Amazing stay

Reviewed on Dec 23, 2025

Opens in a new windowBlack Bear A-Frame Waterfront Log Cabin with Hot Tub Jacuzzi
Country Inn & Suites by Radisson, Prairie du Chien

Country Inn & Suites by Radisson, Prairie du Chien

3 out of 5
1801 Cabela's Lane Prairie Du Chien WI
Fully refundable
$76 nightly
The price is $85 total per night from Feb 11 to Feb 12
$85 total
Feb 11 - Feb 12
Total with taxes and fees
This hotel features a restaurant, an indoor pool, and a bar/lounge. There's fun for all ages with a children's pool and an arcade/game room, and families will ...
Very clean

Reviewed on Jan 11, 2026

Opens in a new windowCountry Inn & Suites by Radisson, Prairie du Chien
Quality Inn & Suites Prairie Du Chien

Quality Inn & Suites Prairie Du Chien

2.5 out of 5
37268 US Highway 18 Prairie Du Chien WI
Fully refundableReserve now, pay when you stay
$53 nightly
The price is $58 total per night from Feb 22 to Feb 23
$58 total
Feb 22 - Feb 23
Total with taxes and fees
This hotel features an indoor pool and a gym. Traveling on business? Take advantage of the business center and free WiFi in public areas. Enjoy the hot tub and ...
Staff very nice

Reviewed on Dec 26, 2025

Opens in a new windowQuality Inn & Suites Prairie Du Chien
Windsor Place Inn

Windsor Place Inn

2 out of 5
1936 Marquette Road South Prairie Du Chien WI
Fully refundableReserve now, pay when you stay
$57 nightly
The price is $64 total per night from Jan 25 to Jan 26
$64 total
Jan 25 - Jan 26
Total with taxes and fees
This hotel doesn't skimp on freebies - guests receive free continental breakfast, free self parking, and a free casino shuttle. Traveling on business? Take advantage ...
Large spacious clean room. Staff was very accommodating and nice.

Reviewed on Jan 19, 2026

Opens in a new windowWindsor Place Inn
AmericInn by Wyndham Prairie du Chien

AmericInn by Wyndham Prairie du Chien

2 out of 5
37502 Us Highway 35 And 18 S Prairie Du Chien WI
Fully refundableReserve now, pay when you stay
$60 nightly
The price is $66 total per night from Jan 28 to Jan 29
$66 total
Jan 28 - Jan 29
Total with taxes and fees
This hotel features an indoor pool and a hot tub. Traveling on business? Take advantage of the business center and free WiFi in public areas. Guests will appreciate ...
Breakfast was very good with a good variety of things to choose from. Parking was veery convenient and we enjoyed the pool and hot tub.

Reviewed on Jan 18, 2026

Opens in a new windowAmericInn by Wyndham Prairie du Chien
Motel 6 Prairie Du Chien, WI

Motel 6 Prairie Du Chien, WI

2 out of 5
533 N Marquette Rd Prairie Du Chien WI
Free WiFi in public areas is provided and the front desk is staffed around-the-clock. Enjoy free perks like free self parking and a casino shuttle. Take advantage ...
It was awesome reuniting with my sister!

Reviewed on Oct 28, 2025

Opens in a new windowMotel 6 Prairie Du Chien, WI
Don't see what you're looking for?
See all available properties in Clayton
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

What are the top kid-friendly hotels in Clayton?
From unique amenities to more room to move, kid-friendly hotels come with features that can help turn a good family vacation into a sensational one. These Clayton options make getting away with children child's play: Cottage on Mississippi River-On the Water! will help make your break the most memorable one yet. It features lots of conveniences aimed at families, such as animal viewing activities and a king bed. Eagle View Motel & Retreat is another great choice. After a long day of exploring, come back home to your comfy room and amenities like a firepit and pet-friendly facilities.
Where can I find cheap hotels in Clayton?
At Travelocity you'll find really nice hotels in Clayton at great prices. We source incredible prices with our trusted partners, so you have a tempting selection of cheap hotels to choose from. If you can be flexible on dates and location, consider staying at a hotel near Clayton rather than in Clayton. We may find you even better rates, too.
How do I find the best Clayton hotel deals?
Simple! On Travelocity, look through the fantastic offers we've already found in Clayton then use our filters to find a great deal that's perfect for you. Enter your travel dates, select the number of rooms you need, and we'll do the rest. You can get great discounts on flights and car hire, too, when you bundle.
How much does it cost to stay in a hotel in Clayton?
The cheapest hotel in Clayton is $58. This price was available within the past 7 days, for stays with a check-in date within the next year. Of course, the price you pay depends on your dates of travel, the length of your stay, and the hotel's location. Prices and availability are subject to change. Additional terms apply.
How many hotels are in Clayton?
There are 103 hotels in Clayton on Travelocity.
What are the best hotels in Clayton?
Clayton has so many great hotels to choose from at Travelocity — and it's so easy to find the perfect one. Just choose one of our popular pre-selected hotels with great reviews, or you can refine your search to build your ideal stay. Simply filter hotels based on price or star rating, or select properties with a pool, a hot tub, or a range of other amenities and pick the best place to stay in Clayton for you!
When is the best time to visit Clayton?
If you want the joy of a fun-filled trip in peak season, visit Clayton during August, September and October. If you'd prefer the peace of off-season, book a stay during quieter months, such as February, November and December.
When is the cheapest time to stay in Clayton?
Based on historic data is usually the cheapest month to visit Clayton. However, we have incredible deals all year round, so we're confident you'll find a room in your budget whenever you choose to travel.
Are there any great family-friendly hotels in Clayton?
There are multiple hotels in Clayton that will please the whole family. Do you need adjoining rooms, babysitting services or a swimming pool? We've got you covered. Use our family filter to narrow your search down and use guest reviews to help you pick the perfect place for your next family trip to Clayton. We have plenty of kid-friendly hotels in Clayton to choose from on Travelocity!
Why book a hotel in Clayton through Travelocity?
Because we have the top hotels in Clayton! We want to help you travel more and worry less. That's why we've put the most amazing hotel, car rental, and flight deals in one place. When you search for hotels with us, you know you're getting fantastic prices with no hidden fees and free cancellation on most properties up to 24 hours before your stay. If you become a Travelocity member, you also get exclusive member discounts. Sign up today!
How do I cancel my hotel booking in Clayton on Travelocity?
Canceling your booking with Travelocity is easy. Sign into your account and select My Trips. Here, you will see your cancellation options. We offer free cancellation on many properties.

Recent Clayton hotel reviews by fellow wanderers