Book Hotels in Santee, NE

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Top Santee hotels

Gavins Point Lakehouse

Gavins Point Lakehouse

Yankton
This vacation home includes a garden and laundry facilities.
Meeting in the Middle
"Gavin’s Point Lakehouse was above and beyond expectations! They really have everything you need and more, from the bigger items to the smallest details. We had family coming from Nebraska and some from South Dakota. It was so great to have such a nice place to call home for the weekend! Highly recommend ..."

Reviewed on Jun 29, 2025

Gavins Point Lakehouse
Shady Creek Cabin - Family Friendly Getaway Near Lake

Shady Creek Cabin - Family Friendly Getaway Near Lake

Yankton
This cabin features a water park, a garden, and laundry facilities. Barbecue grills are provided for your convenience.
"Beautiful home and location! Family loves our stays here!"

Reviewed on Jul 10, 2025

Shady Creek Cabin - Family Friendly Getaway Near Lake
Cozy Cabin get away - walking distant to beach

Cozy Cabin get away - walking distant to beach

Crofton
This cabin featured laundry facilities and barbecue grills.
Birthday Weekend Getaway
"We absolutely love this cabin. We have celebrated my birthday weekend at this little piece of heaven for two years in a row! I cannot say enough wonderful things about this place. The check in process is super easy. Communication with the owner was great. The cabin is kind of hidden and tucked away ..."

Reviewed on Jun 19, 2025

Cozy Cabin get away - walking distant to beach
The Lake House - Lakeview with 6 bedrooms - Yankton,  SD

The Lake House - Lakeview with 6 bedrooms - Yankton, SD

Yankton
This vacation home features a water park, a garden, and laundry facilities. Families will appreciate the arcade/game room and barbecue grills.
Wonderful stay
"We booked this house for a little get together for my parents 50th wedding anniversary and it couldn’t have been more perfect! The communication with the renters was wonderful, the house was so comfortable and beautiful. We will be renting again when we make our way to town!"

Reviewed on Jun 13, 2025

The Lake House - Lakeview with 6 bedrooms - Yankton, SD
Lake property just a few blocks from public beach. Marina a mile away.

Lake property just a few blocks from public beach. Marina a mile away.

Crofton
This vacation home featured laundry facilities and barbecue grills.
"It was a great experience for my first time booking with Vrbo."

Reviewed on Jun 9, 2025

Lake property just a few blocks from public beach. Marina a mile away.
Spacious Lakeview Cabin Minutes from Private Beach

Spacious Lakeview Cabin Minutes from Private Beach

Crofton
This cabin featured laundry facilities and barbecue grills.
Czech Days 2025
"Great location. Plenty of room for 10 adults to relax inside and outside on the deck. Owner very responsive with questions submitted."

Reviewed on Jun 24, 2025

Spacious Lakeview Cabin Minutes from Private Beach
The Bohemian Bungalow  near Main Street in Scenic Verdigre, Nebraska

The Bohemian Bungalow near Main Street in Scenic Verdigre, Nebraska

Verdigre
$192 nightly
The price is $215 total per night from Jul 21 to Jul 22
$215 total
Jul 21 - Jul 22
Total includes taxes and fees
Stay at this vacation home in Verdigre. Enjoy air conditioning.
Cute small town close to Niobrara
"Justin was great about getting back to me quickly. The place was clean and accommodated our family well. We enjoyed going to Reiman Coffee in the morning and a farmer’s market on Saturday morning nearby."

Reviewed on Jul 6, 2025

The Bohemian Bungalow near Main Street in Scenic Verdigre, Nebraska
Lewis and Clark Resort

Lewis and Clark Resort

2.5 out of 5
43496 Shore Drive, Yankton, SD
$124 nightly
The price is $131 total per night from Aug 17 to Aug 18
$131 total
Aug 17 - Aug 18
Total includes taxes and fees
A marina and a restaurant are featured at this hotel. Traveling on business? Take advantage of the free WiFi in public areas, conference center, and conference ...
"Beautiful place, rooms are very outdated but at least clean. Very friendly staff and beautiful beaches"

Reviewed on Jul 3, 2025

Lewis and Clark Resort
2 Mi to Lewis and Clark Lake: Spacious Getaway

2 Mi to Lewis and Clark Lake: Spacious Getaway

Crofton
This vacation home features laundry facilities. There's fun for all ages with a playground and an arcade/game room.
2 Mi to Lewis and Clark Lake: Spacious Getaway
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

What are the top kid-friendly hotels in Santee?
From cool amenities to extra space, kid-friendly hotels come with features that can help transform a routine family vacation into a sensational one. These Santee options make vacationing with your youngsters child's play: The whole team will enjoy their time at Private updated hunting lodge/farmhouse. Pet-friendly facilities and a barbecue grill are just a few of the things that help make this property a favorite. Bear Historic Home is another excellent choice. After an exciting day of exploring, come home to your cozy room and amenities like a king bed and animal viewing activities.
Where can I find cheap hotels in Santee?
At Travelocity you'll find really nice hotels in Santee at great prices. We source incredible prices with our trusted partners, so you have a tempting selection of cheap hotels to choose from. If you can be flexible on dates and location, consider staying at a hotel near Santee rather than in Santee. We may find you even better rates, too.
How do I find the best Santee hotel deals?
Simple! On Travelocity, look through the fantastic offers we've already found in Santee then use our filters to find a great deal that's perfect for you. Enter your travel dates, select the number of rooms you need, and we'll do the rest. You can get great discounts on flights and car hire, too, when you bundle.
How much does it cost to stay in a hotel in Santee?
The cheapest hotel in Santee is $131. This price was available within the past 7 days, for stays with a check-in date within the next year. Of course, the price you pay depends on your dates of travel, the length of your stay, and the hotel's location. Prices and availability are subject to change. Additional terms apply.
How many hotels are in Santee?
There are 59 hotels in Santee on Travelocity.
What are the best hotels in Santee?
Santee has so many great hotels to choose from at Travelocity — and it's so easy to find the perfect one. Just choose one of our popular pre-selected hotels with great reviews, or you can refine your search to build your ideal stay. Simply filter hotels based on price or star rating, or select properties with a pool, a hot tub, or a range of other amenities and pick the best place to stay in Santee for you!
When is the best time to visit Santee?
If you want the joy of a fun-filled trip in peak season, visit Santee during May, July and August. If you'd prefer the peace of off-season, book a stay during quieter months, such as November, December and January.
When is the cheapest time to stay in Santee?
Based on historic data is usually the cheapest month to visit Santee. However, we have incredible deals all year round, so we're confident you'll find a room in your budget whenever you choose to travel.
Are there any great family-friendly hotels in Santee?
There are multiple hotels in Santee that will please the whole family. Do you need adjoining rooms, babysitting services or a swimming pool? We've got you covered. Use our family filter to narrow your search down and use guest reviews to help you pick the perfect place for your next family trip to Santee. We have plenty of kid-friendly hotels in Santee to choose from on Travelocity!
Why book a hotel in Santee through Travelocity?
Because we have the top hotels in Santee! We want to help you travel more and worry less. That's why we've put the most amazing hotel, car rental, and flight deals in one place. When you search for hotels with us, you know you're getting fantastic prices with no hidden fees and free cancellation on most properties up to 24 hours before your stay. If you become a Travelocity member, you also get exclusive member discounts. Sign up today!
How do I cancel my hotel booking in Santee on Travelocity?
Canceling your booking with Travelocity is easy. Sign into your account and select My Trips. Here, you will see your cancellation options. We offer free cancellation on many properties.

Recent Santee hotel reviews by fellow wanderers