Book Hotels in Naper, NE

Start date: Check-in selected.
To Date
End date: Check-out

Cabins, apartments, houseboats! We offer comfortable & private vacation rentals

Save an extra 10% or more on select hotels with Member Discounts

Access exclusive hotel deals, only with the Travelocity app

Filter by

Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Neighborhood
Neighborhood
Traveler experience
Traveler experience
Popular locations
Popular locations
Meal plans available
Meal plans available
Amenities
Amenities
Accessibility
Accessibility

Top Naper hotels

Whetstone Bay Lodge Room 8 - Sleeps 5

Whetstone Bay Lodge Room 8 - Sleeps 5

Bonesteel
$117 nightly
The price is $117 total per night from Nov 19 to Nov 20
$117 total
Nov 19 - Nov 20
Total with taxes and fees
This hotel features barbecue grills.
Everything we needed for the time spent.

Reviewed on Oct 24, 2025

Opens in a new windowWhetstone Bay Lodge Room 8 - Sleeps 5
Entire house for fishing, hunting, or passing by!

Entire house for fishing, hunting, or passing by!

Fairfax
$246 nightly
The price is $263 total per night from Dec 1 to Dec 2
$263 total
Dec 1 - Dec 2
Total with taxes and fees
This vacation home features laundry facilities.
All the amenities of staying at home almost like grandma’s house.

Reviewed on Jun 14, 2025

Opens in a new windowEntire house for fishing, hunting, or passing by!
Whetstone Bay Lodge Room 9 - Sleeps 5

Whetstone Bay Lodge Room 9 - Sleeps 5

Bonesteel
$105 nightly
The price is $105 total per night from Nov 18 to Nov 19
$105 total
Nov 18 - Nov 19
Total with taxes and fees
This hotel features barbecue grills.
Walleye
Average for the price

Reviewed on Jun 28, 2024

Opens in a new windowWhetstone Bay Lodge Room 9 - Sleeps 5
County Line Cabin by Beth

County Line Cabin by Beth

Basin
$251 nightly
The price is $266 total per night from Nov 19 to Nov 20
$266 total
Nov 19 - Nov 20
Total with taxes and fees
This cabin featured laundry facilities and barbecue grills.
We actually didn’t end up staying here. Had to cancel last minute. Which was a real shame as I was looking forward to staying at this property. Beth was so nice and easy to deal with, answered all my questions promptly so I’m giving 5 stars.

Reviewed on Nov 10, 2025

Opens in a new windowCounty Line Cabin by Beth
Whetstone Bay Lodge Room 1 - Sleeps 2 · Whetstone Bay Lodge Room 1 - Sleeps 2

Whetstone Bay Lodge Room 1 - Sleeps 2 · Whetstone Bay Lodge Room 1 - Sleeps 2

Bonesteel
$75 nightly
The price is $75 total per night from Nov 21 to Nov 22
$75 total
Nov 21 - Nov 22
Total with taxes and fees
This hotel features barbecue grills.
Opens in a new windowWhetstone Bay Lodge Room 1 - Sleeps 2 · Whetstone Bay Lodge Room 1 - Sleeps 2
Whetstone Bay Lodge Room 5 - Sleeps 2 · Whetstone Bay Lodge Room 5 - Sleeps 2

Whetstone Bay Lodge Room 5 - Sleeps 2 · Whetstone Bay Lodge Room 5 - Sleeps 2

Bonesteel
$87 nightly
The price is $87 total per night from Nov 18 to Nov 19
$87 total
Nov 18 - Nov 19
Total with taxes and fees
This hotel features barbecue grills.
Opens in a new windowWhetstone Bay Lodge Room 5 - Sleeps 2 · Whetstone Bay Lodge Room 5 - Sleeps 2
Adorable 1 Bedroom Bungalow

Adorable 1 Bedroom Bungalow

2 out of 5
Bonesteel
Stay at this vacation home in Bonesteel. Enjoy air conditioning.
Hunt
Sheets were fantastic. House needs a little work. The heat was good, hot water was good, coffee pot worked fine. The living room rug is bad, needs to be tossed. The on duty manger was very helpful with the lock. Would probably stay again if needed.

Reviewed on Dec 15, 2024

Get rates
Opens in a new windowAdorable 1 Bedroom Bungalow
Pet-friendly Fairfax Cabin Near Missouri River!

Pet-friendly Fairfax Cabin Near Missouri River!

3 out of 5
29802 S Scalp Rd, Fairfax, SD
This cottage doesn't skimp on freebies - guests receive free WiFi and free self parking. Barbecue grills are provided for your convenience.
Get rates
Opens in a new windowPet-friendly Fairfax Cabin Near Missouri River!
Fish & Hike: Small-town Retreat 2 Mi to Burke Lake

Fish & Hike: Small-town Retreat 2 Mi to Burke Lake

3 out of 5
Burke, SD
Free WiFi in public areas is available at this cottage. Take advantage of the free self parking.
Get rates
Opens in a new windowFish & Hike: Small-town Retreat 2 Mi to Burke Lake
Don't see what you're looking for?
See all available properties in Naper
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

Where can I find cheap hotels in Naper?
At Travelocity you'll find really nice hotels in Naper at great prices. We source incredible prices with our trusted partners, so you have a tempting selection of cheap hotels to choose from. If you can be flexible on dates and location, consider staying at a hotel near Naper rather than in Naper. We may find you even better rates, too.
How do I find the best Naper hotel deals?
Simple! On Travelocity, look through the fantastic offers we've already found in Naper then use our filters to find a great deal that's perfect for you. Enter your travel dates, select the number of rooms you need, and we'll do the rest. You can get great discounts on flights and car hire, too, when you bundle.
How much does it cost to stay in a hotel in Naper?
The cheapest hotel in Naper is $75. This price was available within the past 7 days, for stays with a check-in date within the next year. Of course, the price you pay depends on your dates of travel, the length of your stay, and the hotel's location. Prices and availability are subject to change. Additional terms apply.
How many hotels are in Naper?
There are 40 hotels in Naper on Travelocity.
What are the best hotels in Naper?
Naper has so many great hotels to choose from at Travelocity — and it's so easy to find the perfect one. Just choose one of our popular pre-selected hotels with great reviews, or you can refine your search to build your ideal stay. Simply filter hotels based on price or star rating, or select properties with a pool, a hot tub, or a range of other amenities and pick the best place to stay in Naper for you!
When is the best time to visit Naper?
If you want the joy of a fun-filled trip in peak season, visit Naper during May, July and August. If you'd prefer the peace of off-season, book a stay during quieter months, such as November, December and January.
When is the cheapest time to stay in Naper?
Based on historic data is usually the cheapest month to visit Naper. However, we have incredible deals all year round, so we're confident you'll find a room in your budget whenever you choose to travel.
Are there any great family-friendly hotels in Naper?
There are multiple hotels in Naper that will please the whole family. Do you need adjoining rooms, babysitting services or a swimming pool? We've got you covered. Use our family filter to narrow your search down and use guest reviews to help you pick the perfect place for your next family trip to Naper. We have plenty of kid-friendly hotels in Naper to choose from on Travelocity!
Why book a hotel in Naper through Travelocity?
Because we have the top hotels in Naper! We want to help you travel more and worry less. That's why we've put the most amazing hotel, car rental, and flight deals in one place. When you search for hotels with us, you know you're getting fantastic prices with no hidden fees and free cancellation on most properties up to 24 hours before your stay. If you become a Travelocity member, you also get exclusive member discounts. Sign up today!
How do I cancel my hotel booking in Naper on Travelocity?
Canceling your booking with Travelocity is easy. Sign into your account and select My Trips. Here, you will see your cancellation options. We offer free cancellation on many properties.

Recent Naper hotel reviews by fellow wanderers

County Line Cabin by Beth

County Line Cabin by Beth

5 out of 5
Posted 3 days ago
Travelocity Verified Review
"We actually didn’t end up staying here. Had to cancel last minute. Which was a real shame as I was looking forward to staying at this property. Beth was so nice and easy to deal with, answered all my questions promptly so I’m giving 5 stars."
A verified traveler from Saint Francisville, stayed at County Line Cabin by Beth
County Line Cabin by Beth

Explore More Ways to Travel with Travelocity