Cheap Flights to Nagasaki Prefecture from $106 (2025/2026)

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Inside the theme park of Huis Ten Bosch, there are beautiful small villas which built in regular pattern as seen from the view of drone.

Sasebo

Flights
Sasebo

How Much Does it Cost To Fly To Nagasaki Prefecture?

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Mon, Mar 30 - Sat, Apr 4
HND
Haneda
FUK
Fukuoka
$210 Roundtrip, found 1 hour ago
$210
Roundtrip
found 1 hour ago
Select All Nippon Airways flight, departing Mon, Mar 30 from Haneda to Fukuoka, returning Sat, Apr 4, priced at $210 found 1 hour ago
Wed, Oct 29 - Wed, Oct 29
HND
Haneda
KMJ
Kumamoto
$212 Roundtrip, found 15 hours ago
$212
Roundtrip
found 15 hours ago
Select All Nippon Airways flight, departing Wed, Oct 29 from Haneda to Kumamoto, returning Wed, Oct 29, priced at $212 found 15 hours ago
Thu, Dec 4 - Wed, Dec 10
HND
Haneda
FUK
Fukuoka
$213 Roundtrip, found 5 hours ago
$213
Roundtrip
found 5 hours ago
Select Japan Airlines flight, departing Thu, Dec 4 from Haneda to Fukuoka, returning Wed, Dec 10, priced at $213 found 5 hours ago
Sun, Sep 21 - Mon, Sep 29
HND
Haneda
NGS
Nagasaki
$219 Roundtrip, found 2 hours ago
$219
Roundtrip
found 2 hours ago
Select All Nippon Airways flight, departing Sun, Sep 21 from Haneda to Nagasaki, returning Mon, Sep 29, priced at $219 found 2 hours ago
Sun, Jul 27 - Thu, Jul 31
HND
Haneda
HSG
Ariake Saga
$270 Roundtrip, found 6 days ago
$270
Roundtrip
found 6 days ago
Select All Nippon Airways flight, departing Sun, Jul 27 from Haneda to Ariake Saga, returning Thu, Jul 31, priced at $270 found 6 days ago
Thu, Jul 31 - Thu, Aug 7
HNL
Daniel K. Inouye Intl.
NGS
Nagasaki
$517 Roundtrip, found 3 days ago
$517
Roundtrip
found 3 days ago
Select Korean Air flight, departing Thu, Jul 31 from Daniel K. Inouye Intl. to Nagasaki, returning Thu, Aug 7, priced at $517 found 3 days ago
Tue, Jun 24 - Thu, Jun 26
HNL
Daniel K. Inouye Intl.
FUK
Fukuoka
$525 Roundtrip, found 4 hours ago
$525
Roundtrip
found 4 hours ago
Select Alaska Airlines flight, departing Tue, Jun 24 from Daniel K. Inouye Intl. to Fukuoka, returning Thu, Jun 26, priced at $525 found 4 hours ago
Sat, Jun 21 - Sat, Jun 28
HNL
Daniel K. Inouye Intl.
KMJ
Kumamoto
$528 Roundtrip, found 1 day ago
$528
Roundtrip
found 1 day ago
Select Alaska Airlines flight, departing Sat, Jun 21 from Daniel K. Inouye Intl. to Kumamoto, returning Sat, Jun 28, priced at $528 found 1 day ago
Sun, Nov 30 - Thu, Dec 4
LAX
Los Angeles Intl.
FUK
Fukuoka
$718 Roundtrip, found 14 hours ago
$718
Roundtrip
found 14 hours ago
Select Air China flight, departing Sun, Nov 30 from Los Angeles Intl. to Fukuoka, returning Thu, Dec 4, priced at $718 found 14 hours ago
Tue, Sep 9 - Wed, Sep 24
LAX
Los Angeles Intl.
FUK
Fukuoka
$720 Roundtrip, found 5 days ago
$720
Roundtrip
found 5 days ago
Select Alaska Airlines flight, departing Tue, Sep 9 from Los Angeles Intl. to Fukuoka, returning Wed, Sep 24, priced at $720 found 5 days ago
Thu, Mar 26 - Thu, Apr 2
LAS
Harry Reid Intl.
NGS
Nagasaki
$735 Roundtrip, found 1 day ago
$735
Roundtrip
found 1 day ago
Select Korean Air flight, departing Thu, Mar 26 from Harry Reid Intl. to Nagasaki, returning Thu, Apr 2, priced at $735 found 1 day ago
OriginDestinationTravel DatesFlights From*
ITMFukuokaSeptember 25 to October 1$142
ITMFukuokaSeptember 25 to October 1$142
ITMMashikiSeptember 25 to October 2$147
ITMMashikiSeptember 25 to October 2$147
ITMOmuraSeptember 25 to October 1$157
NGOFukuokaAugust 28 to September 1$202
HKGFukuokaJuly 25 to July 31$210
HNDFukuokaSeptember 17 to September 25$210
HNDFukuokaSeptember 17 to September 25$210
HNDMashikiSeptember 23 to September 28$216
HNDOmuraSeptember 21 to September 29$219
HNDSagaJuly 27 to July 31$270
TPEMashikiJuly 31 to August 7$329
HKGMashikiSeptember 8 to September 15$405
TSASagaJuly 30 to August 6$521
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
NRTOmuraJune 29 to July 3$213
ITMFukuokaJune 27 to July 4$249
ITMFukuokaJune 27 to July 4$249
ITMMashikiJune 28 to July 5$277
ITMMashikiJune 28 to July 5$277
NGOFukuokaJune 27 to June 30$299
HKGFukuokaJune 29 to July 2$314
TPEFukuokaJune 29 to July 9$379
TPEMashikiJune 28 to July 6$415
HNDFukuokaJune 27 to June 30$415
HNDFukuokaJune 27 to June 30$415
HNDOmuraJune 29 to July 3$462
*Prices include taxes and fees

Travelers ❤️ These Nagasaki Prefecture 🏨

Hotel Nikko Huis Ten Bosch

Hotel Nikko Huis Ten Bosch

3.5 out of 5
6 Huis Ten Bosch, Sasebo, Nagasaki-ken
Stay at this 3.5-star hotel in Sasebo. Enjoy free WiFi, 2 restaurants, and breakfast (surcharge). Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Huis Ten Bosch and Mukyudo are located nearby.
8.8/10 Excellent! (1,592 reviews)
"The hotel has a side gate where you can access Huis Ten Bosch if you already bought your tickets. A estimated 10 min scenic stroll from train station. The breakfast was excellent. The reception staff were attentive. The room was comfortable and had everything we needed, and we had a nice side view ..."

Reviewed on May 6, 2025

Hotel Nikko Huis Ten Bosch
Hotel Okura JR Huis Ten Bosch

Hotel Okura JR Huis Ten Bosch

4 out of 5
10 Huis Ten Bosch cho, Sasebo, Nagasaki
Stay at this 4-star hotel in Sasebo. Enjoy free WiFi, 4 restaurants, and hot springs on site. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Huis Ten Bosch and Mukyudo are located nearby.
9.2/10 Wonderful! (1,002 reviews)
Jeff and Celene
"Nice place. Room was beautiful. Spacious compared to typical Japanese accommodations which we mostly did on this trip. Great buffets."

Reviewed on May 24, 2025

Hotel Okura JR Huis Ten Bosch
Belleview Nagasaki Dejima

Belleview Nagasaki Dejima

3 out of 5
1-20 Edo-machi, Nagasaki, Nagasaki
Stay at this 3-star hotel in Nagasaki. Enjoy free WiFi, breakfast (surcharge), and parking (surcharge). Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Yume Saito Shopping Mall and Nagasaki Dejima are located nearby.
8.6/10 Excellent! (921 reviews)
"Beautiful, peaceful and clean property. I love it. One days i'll be back!"

Reviewed on Jun 9, 2025

Belleview Nagasaki Dejima
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Hotel Wingport

Hotel Wingport

3 out of 5
9-2 Daikoku-cho, Nagasaki, Nagasaki
Stay at this 3-star hotel in Nagasaki. Enjoy free WiFi, breakfast (surcharge), and daily housekeeping. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Nakamachi Church and Fukusaiji Temple are located nearby.
8.4/10 Very Good! (806 reviews)
"If you are looking for a cheap but comfortable stay for business purposes or for a very short stay, this place is very good. It’s close to the main station, with restaurants nearby. Staff are helpful and very polite"

Reviewed on May 14, 2025

Hotel Wingport
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Destinations in Nagasaki Prefecture

*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.