Cheap Flights to San Juan County from $67 (2026/2027)

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A marina with numerous boats docked, a wooden pier, and a forested hill in the background.

Friday Harbor

Flights
Friday Harbor

How Much Does it Cost To Fly To San Juan County?

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Tue, Oct 6 - Tue, Dec 8
AZA
Phoenix - Mesa Gateway
BLI
Bellingham Intl.
$114 Roundtrip, found 18 hours ago
$114
Roundtrip
found 18 hours ago
Select Allegiant Air flight, departing Tue, Oct 6 from Phoenix - Mesa Gateway to Bellingham Intl., returning Tue, Dec 8, priced at $114 found 18 hours ago
Thu, Dec 10 - Sun, Dec 13
AZA
Phoenix - Mesa Gateway
BLI
Bellingham Intl.
$122 Roundtrip, found 13 hours ago
$122
Roundtrip
found 13 hours ago
Select Allegiant Air flight, departing Thu, Dec 10 from Phoenix - Mesa Gateway to Bellingham Intl., returning Sun, Dec 13, priced at $122 found 13 hours ago
Sun, Sep 27 - Tue, Sep 29
AZA
Phoenix - Mesa Gateway
BLI
Bellingham Intl.
$131 Roundtrip, found 2 days ago
$131
Roundtrip
found 2 days ago
Select Allegiant Air flight, departing Sun, Sep 27 from Phoenix - Mesa Gateway to Bellingham Intl., returning Tue, Sep 29, priced at $131 found 2 days ago
Tue, Oct 6 - Sun, Nov 15
AZA
Phoenix - Mesa Gateway
BLI
Bellingham Intl.
$140 Roundtrip, found 18 hours ago
$140
Roundtrip
found 18 hours ago
Select Allegiant Air flight, departing Tue, Oct 6 from Phoenix - Mesa Gateway to Bellingham Intl., returning Sun, Nov 15, priced at $140 found 18 hours ago
Sun, Jan 10 - Sun, Jan 17
AZA
Phoenix - Mesa Gateway
BLI
Bellingham Intl.
$148 Roundtrip, found 3 hours ago
$148
Roundtrip
found 3 hours ago
Select Allegiant Air flight, departing Sun, Jan 10 from Phoenix - Mesa Gateway to Bellingham Intl., returning Sun, Jan 17, priced at $148 found 3 hours ago
Tue, Oct 6 - Sat, Oct 17
AZA
Phoenix - Mesa Gateway
BLI
Bellingham Intl.
$149 Roundtrip, found 3 hours ago
$149
Roundtrip
found 3 hours ago
Select Allegiant Air flight, departing Tue, Oct 6 from Phoenix - Mesa Gateway to Bellingham Intl., returning Sat, Oct 17, priced at $149 found 3 hours ago
Sun, Jan 17 - Sun, Jan 24
AZA
Phoenix - Mesa Gateway
BLI
Bellingham Intl.
$157 Roundtrip, found 4 days ago
$157
Roundtrip
found 4 days ago
Select Allegiant Air flight, departing Sun, Jan 17 from Phoenix - Mesa Gateway to Bellingham Intl., returning Sun, Jan 24, priced at $157 found 4 days ago
Sun, Sep 27 - Sat, Oct 3
AZA
Phoenix - Mesa Gateway
BLI
Bellingham Intl.
$159 Roundtrip, just found
$159
Roundtrip
just found
Select Allegiant Air flight, departing Sun, Sep 27 from Phoenix - Mesa Gateway to Bellingham Intl., returning Sat, Oct 3, priced at $159 just found
OriginDestinationTravel DatesFlights From*
SEABellinghamOctober 17 to October 24$217
BWIBellinghamOctober 30 to November 6$469
BOSBellinghamSeptember 26 to October 3$482
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
IADBellinghamAugust 29 to September 5$570
*Prices include taxes and fees

Best San Juan County Flight and Hotel Packages

Price found within the past 48 hours. Click for updated prices.
Raintree's Sandcastle
3.5-star property

Raintree's Sandcastle

Oct 1 - Oct 6

5 night stay

Kalispell (FCA) to Bellingham (BLI)

Alaska Airlines • Coach

Bellingham (BLI) to Kalispell (FCA)

Delta • Coach
Price was $1,412, price is now $681 per person
$681
per person
found 17 hours ago
Inn to the Woods B&B
3.5-star property

Inn to the Woods B&B

Oct 1 - Oct 6

5 night stay

Kalispell (FCA) to Friday Harbor (FBS)

Alaska Airlines • Coach

Friday Harbor (FBS) to Kalispell (FCA)

Delta • Coach
Price was $1,445, price is now $951 per person
$951
per person
found 17 hours ago
@ Marbella Lane Wave HS W/ev Charger, Oceanfront!
3.0-star property

@ Marbella Lane Wave HS W/ev Charger, Oceanfront!

Oct 1 - Oct 6

5 night stay

Kalispell (FCA) to Bellingham (BLI)

Alaska Airlines • Coach

Bellingham (BLI) to Kalispell (FCA)

Delta • Coach
Price was $1,942, price is now $1,348 per person
$1,348
per person
found 17 hours ago
Don't see what you're looking for?
See all available trips from Kalispell to San Juan County
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Travelers ❤️ These San Juan County 🏨

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and housekeeping. Popular attractions San Juan Islands Museum of Art and San Juan Historical Society and Museum are located nearby.
Opens in a new windowThe Orca Inn
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
Stay at this B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve are located nearby.
9.8/10 Exceptional! (104 reviews)
"We can’t say enough about our time at Inn to the Woods, from the supportive and flexible communications around travel and arrival to the extremely welcoming amenities. We had privacy to enjoy our time together from our lovely sweet and private hot tub and also enjoyed connecting with other guests ..."

Reviewed on Aug 9, 2026

Opens in a new windowInn to the Woods B&B
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions San Juan Historical Society and Museum and San Juan Islands Museum of Art are located nearby.
Opens in a new windowFriday Harbor Suites
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Rosario Resort

Rosario Resort

2 out of 5
1624 Rosario Rd Eastsound WA
Book a stay at this beach hotel in Eastsound. Enjoy free WiFi, free parking, and an outdoor pool. Popular attractions Rosario Mansion Museum and Cascade Lake are located nearby.
Opens in a new windowRosario Resort
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

How much is the cheapest flight to San Juan County?
Some thrifty travelers booked a roundtrip flight to San Juan County for as little as $114 in the last seven days. If you find a bargain, act fast. Cheap deals don't wait around for long! This price was available on Travelocity for flights to San Juan County departing within the next year. Prices and availability are subject to change. Additional terms apply.
What is the cheapest month to fly to San Juan County?
Leave October clear in your calendar, because it's the cheapest time to jet to San Juan County. That's according to Travelocity's direct flight demand from January to December last year. With the money you save, you can go on a shopping binge, go for a fancy meal or do something special.
How can I check my flight status to San Juan County?
Whether you want to confirm the status of your flight to San Juan County or make changes to your itinerary, you'll find all the necessary details on our customer portal, Trips. Click on "Trips" at the top of the Travelocity homepage, then sign in or create a new account. Another simple way to access and manage all your bookings is with the Travelocity app. Get real-time notifications about your flight and share updates with any family flying with you.
How do I find the best deals on flights to San Juan County?
Pick up a bargain with Travelocity — our "Flexible dates" search tool makes it considerably easier. Enter your desired dates, then hit the flexible dates box above your results to compare prices for nearby days. $114 was the most affordable price for a return flight to San Juan County in the last seven days on our site. This price was available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
Why should I book my flight to San Juan County with Travelocity?
If you want cheap flights to San Juan County, you'll find some great deals with Travelocity. From cheap family flights on budget airlines to flexible tickets, we can help you. Experience a hassle-free vacation with our round-the-clock online chat support, Price Match Guarantee and free cancellations with most hotels. Start planning your schedule and get set to take off to this vibrant destination.
How much is a flight to San Juan County on average?
Airfares for roundtrip flights to San Juan County were priced between $114 and $570 in the last seven days. The moment you see a fantastic deal, lock it in and get ready to jet off on your next big adventure with Travelocity. These prices were available on Travelocity for flights departing within the next year. Prices and availability are subject to change. Additional terms apply.
What can I expect on a flight to San Juan County?
This depends on your departure point and which carrier you choose. There's likely to be a variety of flights to San Juan County, from first class journeys to cheap flights for family vacations. If a flight is classed as long haul, the airline will typically provide hot meals and entertainment as well as games to keep your little ones amused.