Cheap Flights to Nagasaki Prefecture from $243 (2025/2026)

Feel at ease with free flight cancellations within 24 hours of booking

Change your flight without a fee on select flights

Jet to one of Nagasaki Prefecture's top cities

How Much Does it Cost To Fly To Nagasaki Prefecture?

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

OriginDestinationTravel DatesFlights From*
ITMFukuokaSeptember 3 to September 3$142
ITMFukuokaSeptember 3 to September 3$142
ITMMashikiAugust 28 to September 3$187
ITMMashikiAugust 28 to September 3$187
NGOOmuraSeptember 20 to September 21$209
NGOFukuokaJuly 22 to July 23$209
HNDMashikiSeptember 9 to September 13$217
HNDOmuraSeptember 12 to September 14$230
HKGMashikiAugust 30 to September 6$239
TPEMashikiAugust 4 to August 13$326
TSAOmuraJune 25 to June 29$441
TSASagaJune 25 to June 30$441
HNDSagaJune 25 to June 25$444
HNDSagaJune 25 to June 25$444
LGWFukuokaSeptember 1 to September 11$918
*Prices include taxes and fees
OriginDestinationTravel DatesFlights From*
ITMMashikiJune 14 to June 18$274
TPEFukuokaJune 15 to June 19$280
HKGFukuokaJune 13 to June 15$282
ITMOmuraJune 14 to June 18$282
HNDFukuokaJune 15 to June 19$412
HNDFukuokaJune 15 to June 19$412
HNDMashikiJune 14 to June 16$442
HNDMashikiJune 14 to June 16$442
HNDOmuraJune 15 to June 15$557
HNDOmuraJune 15 to June 15$557
TPEMashikiJune 14 to June 19$599
*Prices include taxes and fees

Travelers ❤️ These Nagasaki Prefecture 🏨

Hotel Nikko Huis Ten Bosch

Hotel Nikko Huis Ten Bosch

3.5 out of 5
6 Huis Ten Bosch, Sasebo, Nagasaki-ken
Stay at this 3.5-star hotel in Sasebo. Enjoy free WiFi, 2 restaurants, and breakfast (surcharge). Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Huis Ten Bosch and Mukyudo are located nearby.
8.8/10 Excellent! (1,591 reviews)
"The hotel has a side gate where you can access Huis Ten Bosch if you already bought your tickets. A estimated 10 min scenic stroll from train station. The breakfast was excellent. The reception staff were attentive. The room was comfortable and had everything we needed, and we had a nice side view ..."

Reviewed on May 6, 2025

Hotel Nikko Huis Ten Bosch
Hotel Okura JR Huis Ten Bosch

Hotel Okura JR Huis Ten Bosch

4 out of 5
10 Huis Ten Bosch cho, Sasebo, Nagasaki
Stay at this 4-star hotel in Sasebo. Enjoy free WiFi, 4 restaurants, and hot springs on site. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Huis Ten Bosch and Mukyudo are located nearby.
9.2/10 Wonderful! (1,003 reviews)
Jeff and Celene
"Nice place. Room was beautiful. Spacious compared to typical Japanese accommodations which we mostly did on this trip. Great buffets."

Reviewed on May 24, 2025

Hotel Okura JR Huis Ten Bosch
Belleview Nagasaki Dejima

Belleview Nagasaki Dejima

3 out of 5
1-20 Edo-machi, Nagasaki, Nagasaki
Stay at this 3-star hotel in Nagasaki. Enjoy free WiFi, breakfast (surcharge), and parking (surcharge). Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Yume Saito Shopping Mall and Nagasaki Dejima are located nearby.
8.6/10 Excellent! (916 reviews)
"Beautiful, peaceful and clean property. I love it. One days i'll be back!"

Reviewed on Jun 9, 2025

Belleview Nagasaki Dejima
Save an average of 15% on thousands of hotels when you're signed in
Hotel Wingport

Hotel Wingport

3 out of 5
9-2 Daikoku-cho, Nagasaki, Nagasaki
Stay at this 3-star hotel in Nagasaki. Enjoy free WiFi, breakfast (surcharge), and daily housekeeping. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Nakamachi Church and Fukusaiji Temple are located nearby.
8.4/10 Very Good! (802 reviews)
"If you are looking for a cheap but comfortable stay for business purposes or for a very short stay, this place is very good. It’s close to the main station, with restaurants nearby. Staff are helpful and very polite"

Reviewed on May 14, 2025

Hotel Wingport
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.