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Featured Mission Bay Independent Hotels

See all 280 Hotels in Mission Bay
Bahia Resort Hotel

Bahia Resort Hotel

998 W Mission Bay Dr, San Diego
4.0 out of 5.0
3.8 out of 5 (152 reviews)
Great family fun Great place for family Nice free arcade games. Kevin was great at check in - 

$99

$99
The Dana on Mission Bay

The Dana on Mission Bay

1710 W Mission Bay Dr, San Diego
4.0 out of 5.0
3.9 out of 5 (204 reviews)
Quiet location, yet close to the beach. Older hotel without many amenities, but we were gone sight … - 

$97

$97
Catamaran Resort and Spa

Catamaran Resort and Spa

3999 Mission Boulevard, San Diego
4.5 out of 5.0
4.3 out of 5 (230 reviews)
Honeymoon Getaway Hotel staff was excellent! Super friendly and always willing to help. From the front desk to restau … - 

$129

$129
Motel San Diego

Motel San Diego

4780 Mission Bay Dr, San Diego
2.5 out of 5.0
1.0 out of 5 (1 reviews)

$47

$47
Pet Friendly Bayside Studio With Kingsize Bed, Kitchenette and Beach Cruisers!

Pet Friendly Bayside Studio With Kingsize Bed, Kitchenette and Beach Cruisers!

3038 glendora street, san diego
40 Steps To The Sand, Entire Home, Walk To All, Reserved Parking, Super Clean!!

40 Steps To The Sand, Entire Home, Walk To All, Reserved Parking, Super Clean!!

3764 Bayside Lane #1, Mission Beach
2 Bedroom Townhome 2 Mins. to the Beach

2 Bedroom Townhome 2 Mins. to the Beach

823 Nantasket Ct, San Diego
4.0 out of 5.0
Can't get any Closer to the Sand! Huge Patio/sunsets/fun & Sun!

Can't get any Closer to the Sand! Huge Patio/sunsets/fun & Sun!

3405 Ocean Front Walk, San Diego
20%discounted! Best Location! 1 House From Ocean. Charming, Clean

20%discounted! Best Location! 1 House From Ocean. Charming, Clean

716 Jersey Court, San Diego
Beachfront Beauty - Just the Boardwalk Between you and the Beach!!

Beachfront Beauty - Just the Boardwalk Between you and the Beach!!

3750 Bayside Walk, San Diego
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Recently booked Mission Bay hotels

Bahia Resort Hotel
4.0 out of 5.0
Last booking: 22 minutes ago
Holiday Inn Express San Diego Sea World - Beach Area
3.0 out of 5.0
Last booking: 22 minutes ago
Red Roof Inn San Diego - Pacific Beach/SeaWorld Area
2.5 out of 5.0
Last booking: 29 minutes ago
Paradise Point Resort & Spa
4.5 out of 5.0
Last booking: 1 hour ago
The Dana on Mission Bay
4.0 out of 5.0
Last booking: 1 hour ago
Hyatt Regency Mission Bay Spa and Marina
4.5 out of 5.0
Last booking: 1 hour ago
Hilton San Diego Resort & Spa
4.5 out of 5.0
Last booking: 1 hour ago
La Quinta Inn & Suites San Diego Mission Bay
3.0 out of 5.0
Last booking: 9 hours ago
Catamaran Resort and Spa
4.5 out of 5.0
Last booking: 12 hours ago

About Mission Bay Independent Hotels

What's in a name? For many Mission Bay travelers, a reservation at a Independent is their top travel preference. Travelocity understands this loyalty, which is why you’ll find some of the best deals for your stay at Mission Bay Independent hotels.

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